| ID | SAVERM_3907
| Type | CDS
|
| From | 4826945
| nt length | 384
|
| To | 4826562
| aa length | 127
|
| Gene | cspB1
| pI | 7.54
|
| Definition | putative cold shock protein
| M.W (Da) | 13601
|
| Note | PF00313: 'Cold-shock' DNA-binding domain
| AseI frg. | G1
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | adaptation to atypical conditions
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4325 cspB cold shock protein B | 246 | 1.0e-86
|
| sgr | SGR_3176 putative cold shock protein | 242 | 2.0e-85
|
| sam | SAM23877_3380 Cold shock protein CspC | 247 | 3.0e-87
|
| scab | SCAB50821 putative cold shock protein | 234 | 5.0e-82
|
| sace | SACE_0594 cold-shock DNA-binding domain protein | 145 | 1.0e-46
|
| nfar | nfa6390 cold shock protein | 146 | 4.7e-37
|
| mtub | gi|15608011 PROBABLE COLD SHOCK-LIKE PROTEIN B CSPB [Mycobacterium tuberculosis H37Rv] | 145 | 1.1e-36
|
| cglu | gi|19552047 COG1278:Cold shock proteins [Corynebacterium glutamicum] | 116 | 3.0e-28
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| CSD | 1 | 'Cold-shock' DNA-binding domain | 3-63 | 73.3 | 9.5e-21
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3496 | Seems to have no N-terminal signal seq.
|