| ID | SAVERM_3912
| Type | CDS
|
| From | 4832156
| nt length | 1644
|
| To | 4833799
| aa length | 547
|
| Gene |
| pI | 6.18
|
| Definition | putative ATP-dependent DNA helicase
| M.W (Da) | 60994
|
| Note | PF00271: Helicase conserved C-terminal domain
| AseI frg. | G1
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA modification & repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| sgr | SGR_3186 putative ATP-dependent DNA helicase | 1062 | 0.0e+00
|
| sam | SAM23877_3395 putative DNA repair helicase RAD25 like protein | 1082 | 0.0e+00
|
| scab | SCAB50741 putative ATP-dependent DNA helicase | 1074 | 0.0e+00
|
| sace | SACE_0545 ATP-dependent DNA helicase | 860 | 0.0e+00
|
| nfar | nfa6290 DNA helicase | 854 | 0.0e+00
|
| mtub | gi|15608001 PROBABLE DNA HELICASE ERCC3 [Mycobacterium tuberculosis H37Rv] | 826 | 0.0e+00
|
| cglu | gi|19552043 COG1061:DNA or RNA helicases of superfamily II [Corynebacterium glutamicum] | 818 | 0.0e+00
|
*sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| ERCC3_RAD25_C | 1 | ERCC3/RAD25/XPB C-terminal helicase | 352-540 | 165.8 | 8.9e-49
|
| Helicase_C_3 | 1 | Helicase conserved C-terminal domain | 5-132 | 158.2 | 9.6e-47
|
| Helicase_C | 1 | Helicase conserved C-terminal domain | 403-497 | 51.2 | 1.3e-13
|
| ResIII | 1 | Type III restriction enzyme, res subunit | 181-325 | 50.5 | 2.1e-13
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2437 | Seems to have no N-terminal signal seq.
|