| ID | SAVERM_3970
| Type | CDS
|
| From | 4896579
| nt length | 483
|
| To | 4896097
| aa length | 160
|
| Gene |
| pI | 5.39
|
| Definition | putative CarD-like transcriptional regulator
| M.W (Da) | 17829
|
| Note | PF02559: CarD-like/TRCF domain
| AseI frg. | G1
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4232 putative transcriptional factor regulator | 320 | 7.0e-115
|
| sgr | SGR_4011 putative CarD-like transcriptional regulator | 320 | 7.0e-115
|
| sam | SAM23877_3468 RNA polymerase-binding transcription factor CarD | 320 | 7.0e-115
|
| scab | SCAB50081 putative CarD-like transcriptional regulator | 320 | 9.0e-115
|
| sace | SACE_0438 CarD family transcriptional regulator | 281 | 1.0e-99
|
| nfar | nfa4350 transcriptional regulator | 273 | 5.2e-75
|
| mtub | gi|15610719 POSSIBLE TRANSCRIPTION FACTOR [Mycobacterium tuberculosis H37Rv] | 271 | 2.0e-74
|
| cglu | gi|19553858 COG1329:Transcriptional regulators, similar to M. xanthus CarD [Corynebacterium glutamicum] | 216 | 5.5e-58
|
| bsub | BG12129 ydeB; similar to hypothetical proteins | 104 | 2.9e-24
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| CarD_CdnL_TRCF | 1 | CarD-like/TRCF domain | 3-111 | 67.3 | 1.3e-18
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_003953493.1 | MULTISPECIES: CarD family transcriptional regulator [Strepto...
| 819 | 5.5e-111 |
| WP_030906640.1 | CarD family transcriptional regulator [Streptomyces sp. NRRL...
| 816 | 1.4e-110 |
| WP_128432156.1 | CarD family transcriptional regulator [Streptomyces cyaneus]
| 816 | 1.7e-110 |
| WP_030419515.1 | MULTISPECIES: CarD family transcriptional regulator [unclass...
| 816 | 1.7e-110 |
| WP_120722213.1 | MULTISPECIES: CarD family transcriptional regulator [Strepto...
| 816 | 1.9e-110 |
| WP_007825257.1 | CarD family transcriptional regulator [Streptomyces sp. Tu60...
| 815 | 2.1e-110 |
| WP_222975880.1 | CarD family transcriptional regulator [Streptomyces sp. PTM0...
| 815 | 2.2e-110 |
| WP_010472787.1 | MULTISPECIES: CarD family transcriptional regulator [Strepto...
| 815 | 2.2e-110 |
| WP_200304059.1 | CarD family transcriptional regulator [Streptomyces adelaide...
| 815 | 2.3e-110 |
| WP_006380568.1 | MULTISPECIES: CarD family transcriptional regulator [Strepto...
| 815 | 2.5e-110 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1555 | Seems to have no N-terminal signal seq.
|