| ID | SAVERM_4010
| Type | CDS
|
| From | 4932180
| nt length | 342
|
| To | 4931839
| aa length | 113
|
| Gene |
| pI | 11.08
|
| Definition | putative membrane protein
| M.W (Da) | 12254
|
| Note |
| AseI frg. | G1
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | miscellaneous
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4200 putative membrane protein | 131 | 9.0e-42
|
| sgr | SGR_3989 hypothetical protein | 84 | 4.0e-23
|
| sam | SAM23877_3496 putative membrane protein | 156 | 1.0e-51
|
| scab | SCAB49861 putative membrane protein | 152 | 7.0e-50
|
| nfar | nfa52070 hypothetical protein | 55 | 8.4e-10
|
| mtub | gi|15607617 POSSIBLE CONSERVED TRANSMEMBRANE PROTEIN [Mycobacterium tuberculosis H37Rv] | 57 | 1.8e-10
|
| cglu | gi|19551624 COG0477:Permeases of the major facilitator superfamily [Corynebacterium glutamicum] | 50 | 2.7e-08
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DUF2516 | 1 | Protein of unknown function (DUF2516) | 7-92 | 101.7 | 1.8e-29
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| AVH57986.1 | DUF2516 domain-containing protein [Streptomyces dengpaensis]
| 258 | 4.9e-27 |
| WP_167459320.1 | MULTISPECIES: DUF2516 family protein [Streptomyces] >gb
| 258 | 6.0e-27 |
| WP_037873825.1 | MULTISPECIES: DUF2516 family protein [unclassified Streptomy...
| 255 | 1.6e-26 |
| EYT79041.1 | membrane protein [Streptomyces sp. Tu 6176] >gb
| 256 | 1.6e-26 |
| WP_037857283.1 | DUF2516 family protein [Streptomyces sp. NRRL S-340]
| 253 | 3.4e-26 |
| WP_183154725.1 | DUF2516 family protein [Streptomyces shenzhenensis]
| 249 | 1.3e-25 |
| RMB81592.1 | hypothetical protein CTZ28_33780 [Streptomyces shenzhenensis]
| 249 | 1.4e-25 |
|
| 247 | 2.7e-25 |
| GGX88220.1 | membrane protein [Streptomyces anandii JCM 4720]
| 247 | 3.0e-25 |
| WP_189706008.1 | DUF2516 family protein [Streptomyces anandii]
| 246 | 3.3e-25 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.5458 | Seems to have a cleavable N-term signal seq.
|