| ID | SAVERM_4128
| Type | CDS
|
| From | 5064051
| nt length | 3978
|
| To | 5068028
| aa length | 1325
|
| Gene | hrpA
| pI | 7.95
|
| Definition | putative ATP-dependent helicase
| M.W (Da) | 149924
|
| Note | PF04408: Helicase associated domain (HA2)
| AseI frg. | H
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA modification & repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4092 ATP-dependent helicase | 2498 | 0.0e+00
|
| sgr | SGR_3884 putative ATP-dependent helicase | 2258 | 0.0e+00
|
| sam | SAM23877_3588 ATP-dependent helicase | 2506 | 0.0e+00
|
| scab | SCAB47921 putative ATP-dependent helicase | 2492 | 0.0e+00
|
| sace | SACE_6203 ATP-dependent helicase | 1703 | 0.0e+00
|
| nfar | nfa37970 hrpA ATP-dependent helicase | 1425 | 0.0e+00
|
| cglu | gi|19553131 COG1643:HrpA-like helicases [Corynebacterium glutamicum] | 1276 | 0.0e+00
|
| ecoli | gi|49176106 helicase, ATP-dependent [Escherichia coli K12] | 1627 | 0.0e+00
|
| paer | PA3297 [gene=PA3297] [prot=probable ATP-dependent helicase] [comment=PA3297] | 1137 | 0.0e+00
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DUF3418 | 1 | Domain of unknown function (DUF3418) | 726-1321 | 762.1 | 3.8e-229
|
| OB_NTP_bind | 1 | Oligonucleotide/oligosaccharide-binding (OB)-fold | 625-712 | 69.6 | 2.1e-19
|
| HA2 | 1 | Helicase associated domain (HA2) | 468-559 | 69.2 | 2.8e-19
|
| Helicase_C | 1 | Helicase conserved C-terminal domain | 287-405 | 41.2 | 1.6e-10
|
| DEAD | 1 | DEAD/DEAH box helicase | 87-234 | 28.5 | 1e-06
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_189187300.1 | ATP-dependent RNA helicase HrpA [Streptomyces albiflavescens...
| 6338 | 0.0e+00 |
| WP_095853841.1 | ATP-dependent RNA helicase HrpA [Streptomyces sp. Ag82_O1-15...
| 6336 | 0.0e+00 |
| WP_181650811.1 | ATP-dependent RNA helicase HrpA [Streptomyces sp. WAC00263] ...
| 6332 | 0.0e+00 |
| WP_097225446.1 | ATP-dependent RNA helicase HrpA [Streptomyces sp. OV198] >em...
| 6332 | 0.0e+00 |
| WP_075031368.1 | ATP-dependent RNA helicase HrpA [Streptomyces mirabilis] >em...
| 6330 | 0.0e+00 |
| WP_037615231.1 | ATP-dependent RNA helicase HrpA [Streptomyces aureus]
| 6329 | 0.0e+00 |
| WP_151478962.1 | ATP-dependent RNA helicase HrpA [Streptomyces albicerus]
| 6327 | 0.0e+00 |
| WP_164369487.1 | ATP-dependent RNA helicase HrpA [Streptomyces sp. SID14446] ...
| 6325 | 0.0e+00 |
| WP_097285333.1 | MULTISPECIES: ATP-dependent RNA helicase HrpA [unclassified ...
| 6322 | 0.0e+00 |
| WP_217574973.1 | ATP-dependent RNA helicase HrpA [Streptomyces sp. GbtcB7]
| 6321 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| Not Clear | | Seems to have an uncleavable N-term signal seq
|