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IDSAVERM_4154 TypeCDS
From5102772 nt length204
To5102975 aa length67
GenecspD3 pI4.54
Definitionputative cold shock protein M.W (Da)7186
NotePF00313: 'Cold-shock' DNA-binding domain AseI frg.H
SignalP v.4.0Non-secretory protein | plot Categoryadaptation to atypical conditions

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO5921 scoF4 cold-shock domain protein1309.0e-43
samSAM23877_4275 cold shock protein-like protein1322.0e-43
scabSCAB87581 putative cold shock protein1273.0e-41

*coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

CSD1'Cold-shock' DNA-binding domain3-65104.02.5e-30

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_236242280.1 cold-shock protein [Streptomyces sp. CC228A] 3432.6e-41
WP_030693997.1 MULTISPECIES: cold-shock protein [Streptomyces] >lcl 3423.9e-41
WP_158991800.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3414.8e-41
WP_030939356.1 MULTISPECIES: cold-shock protein [Streptomyces] >lcl 3415.1e-41
WP_031141049.1 MULTISPECIES: cold-shock protein [Streptomyces] >lcl 3408.6e-41
GGU14693.1 cold-shock protein [Streptomyces lateritius] 3408.7e-41
WP_201820252.1 MULTISPECIES: cold-shock protein [Streptomyces] >lcl 3399.6e-41
WP_093875261.1 cold-shock protein [Streptomyces sp. TLI_105] >emb 3391.0e-40
WP_190190300.1 cold-shock protein [Streptomyces minutiscleroticus] >dbj 3391.0e-40
BAU84440.1 cold shock protein [Streptomyces laurentii] 3391.1e-40

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.2761 Seems to have no N-terminal signal seq.