| ID | SAVERM_4172
| Type | CDS
|
| From | 5121847
| nt length | 627
|
| To | 5122473
| aa length | 208
|
| Gene |
| pI | 8.94
|
| Definition | hypothetical protein
| M.W (Da) | 22680
|
| Note | PF03729: Short repeat of unknown function (DUF308)
| AseI frg. | H
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4047 conserved hypothetical protein | 309 | 3.0e-109
|
| sgr | SGR_3531 conserved hypothetical protein | 292 | 4.0e-102
|
| sam | SAM23877_3636 hypothetical protein | 309 | 3.0e-109
|
| scab | SCAB47391 hypothetical protein | 305 | 2.0e-107
|
| sace | SACE_1790 HhH-GPD | 192 | 4.0e-63
|
| nfar | nfa2790 hypothetical protein | 215 | 2.0e-57
|
| mtub | gi|15608296 hypothetical protein Rv1156 [Mycobacterium tuberculosis H37Rv] | 228 | 2.3e-61
|
| ecoli | gi|16131825 regulator of sigma D [Escherichia coli K12] | 28 | 3.4e-01
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| HhH-GPD | 1 | HhH-GPD superfamily base excision DNA repair protein | 32-202 | 54.0 | 1.8e-14
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_189841627.1 | Fe-S cluster assembly protein HesB [Streptomyces umbrinus] >...
| 865 | 1.7e-116 |
| WP_055618079.1 | Fe-S cluster assembly protein HesB [Streptomyces phaeochromo...
| 861 | 5.5e-116 |
| WP_143643424.1 | Fe-S cluster assembly protein HesB [Streptomyces sp. IB20169...
| 859 | 1.2e-115 |
| WP_099505393.1 | MULTISPECIES: Fe-S cluster assembly protein HesB [Streptomyc...
| 858 | 1.5e-115 |
| WP_190230872.1 | Fe-S cluster assembly protein HesB [Streptomyces umbrinus] >...
| 856 | 3.4e-115 |
| WP_189187263.1 | Fe-S cluster assembly protein HesB [Streptomyces albiflavesc...
| 854 | 6.4e-115 |
| WP_164372132.1 | Fe-S cluster assembly protein HesB [Streptomyces sp. SID1444...
| 854 | 6.4e-115 |
| WP_200396876.1 | Fe-S cluster assembly protein HesB [Streptomyces sp. ZYC-3] ...
| 853 | 8.2e-115 |
| WP_081218216.1 | Fe-S cluster assembly protein HesB [Streptomyces sp. M41(201...
| 853 | 9.3e-115 |
| WP_055515664.1 | Fe-S cluster assembly protein HesB [Streptomyces aurantiacus...
| 849 | 4.0e-114 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1498 | Seems to have no N-terminal signal seq.
|