| ID | SAVERM_4180
| Type | CDS
|
| From | 5129204
| nt length | 429
|
| To | 5129632
| aa length | 142
|
| Gene | cdd3
| pI | 6.26
|
| Definition | putative cytidine/deoxycytidine deaminase
| M.W (Da) | 15301
|
| Note | PF00383: Cytidine and deoxycytidylate deaminase zinc-binding region
| AseI frg. | H
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of nucleotides & nucleic acids
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4038 putative deaminase | 227 | 7.0e-79
|
| sgr | SGR_3537 putative deaminase | 224 | 1.0e-77
|
| sam | SAM23877_3645 tRNA-specific adenosine deaminase | 231 | 2.0e-80
|
| scab | SCAB47321 putative cytidine/deoxycytidine deaminase | 219 | 7.0e-75
|
| sace | SACE_0233 CMP/dCMP deaminase, zinc-binding | 175 | 4.0e-58
|
| nfar | nfa2380 cytidine/deoxycytidylate deaminase | 180 | 4.9e-47
|
| mtub | gi|15610888 POSSIBLE CYTIDINE/DEOXYCYTIDYLATE DEAMINASE [Mycobacterium tuberculosis H37Rv] | 168 | 1.1e-43
|
| cglu | gi|19551479 COG0590:Cytosine/adenosine deaminases [Corynebacterium glutamicum] | 156 | 3.2e-40
|
| bsub | BG10082 yaaJ; tRNA specific adenosine deaminase | 151 | 1.3e-38
|
| ecoli | gi|16130484 tRNA-specific adenosine deaminase [Escherichia coli K12] | 149 | 5.5e-38
|
| paer | PA3767 [gene=PA3767] [prot=conserved hypothetical protein] [comment=PA3767] | 135 | 1.4e-33
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| MafB19-deam | 1 | MafB19-like deaminase | 1-141 | 116.8 | 5.5e-34
|
| dCMP_cyt_deam_1 | 1 | Cytidine and deoxycytidylate deaminase zinc-binding region | 1-95 | 96.4 | 6.8e-28
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_164883454.1 | tRNA adenosine(34) deaminase TadA [Streptomyces sp. S10(2018...
| 563 | 2.0e-72 |
| WP_189923850.1 | MULTISPECIES: tRNA adenosine(34) deaminase TadA [Streptomyce...
| 562 | 2.2e-72 |
| WP_087811990.1 | unnamed protein product [Streptomyces tendae] >gb
| 562 | 2.5e-72 |
| WP_078606593.1 | tRNA adenosine(34) deaminase TadA [Streptomyces violaceorubi...
| 562 | 2.8e-72 |
| OQR60791.1 | tRNA-specific adenosine deaminase [Streptomyces sp. B9173]
| 561 | 3.2e-72 |
| WP_229850548.1 | tRNA adenosine(34) deaminase TadA [Streptomyces fumigatiscle...
| 561 | 3.4e-72 |
| WP_063482453.1 | tRNA adenosine(34) deaminase TadA [Streptomyces ambofaciens]...
| 561 | 3.6e-72 |
| WP_229913607.1 | tRNA adenosine(34) deaminase TadA [Streptomyces capitiformic...
| 561 | 3.7e-72 |
| WP_053133634.1 | tRNA adenosine(34) deaminase TadA [Streptomyces ambofaciens]...
| 561 | 3.8e-72 |
| RDD89589.1 | nucleoside deaminase [Streptomyces parvulus]
| 560 | 4.8e-72 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1001 | Seems to have a cleavable N-term signal seq.
|