| ID | SAVERM_4223
| Type | CDS
|
| From | 5179259
| nt length | 1419
|
| To | 5177841
| aa length | 472
|
| Gene | pepD3
| pI | 4.93
|
| Definition | putative serine protease, secreted
| M.W (Da) | 46086
|
| Note | PF00089: Trypsin
| AseI frg. | H
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | protein modification
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3977 putative protease | 578 | 0.0e+00
|
| sgr | SGR_3614 putative serine protease | 464 | 1.0e-160
|
| sam | SAM23877_3686 putative protease (secreted protein) | 556 | 0.0e+00
|
| scab | SCAB46811 putative serine protease, secreted | 553 | 0.0e+00
|
| nfar | nfa49620 protease | 286 | 2.7e-78
|
| cglu | gi|19552102 COG0265:Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain [Corynebacterium glutamicum] | 271 | 4.8e-74
|
| bsub | BG14155 yvtA; similar to serine protease Do | 161 | 8.7e-41
|
| ecoli | gi|16131124 serine endoprotease [Escherichia coli K12] | 180 | 2.1e-46
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Trypsin_2 | 1 | Trypsin-like peptidase domain | 182-328 | 119.6 | 2e-34
|
| PDZ_2 | 1 | PDZ domain | 376-465 | 90.4 | 6.5e-26
|
| Trypsin | 1 | Trypsin | 165-338 | 55.1 | 8.5e-15
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_189187209.1 | trypsin-like peptidase domain-containing protein [Streptomyc...
| 1274 | 7.8e-170 |
| WP_028804018.1 | trypsin-like peptidase domain-containing protein [Streptomyc...
| 1271 | 2.3e-169 |
| WP_095935360.1 | trypsin-like peptidase domain-containing protein [Streptomyc...
| 1268 | 6.4e-169 |
| WP_148009216.1 | trypsin-like peptidase domain-containing protein [Streptomyc...
| 1265 | 2.3e-168 |
| WP_099501960.1 | MULTISPECIES: trypsin-like peptidase domain-containing prote...
| 1241 | 7.7e-165 |
| WP_153289700.1 | trypsin-like peptidase domain-containing protein [Streptomyc...
| 1238 | 3.1e-164 |
| WP_099921770.1 | trypsin-like peptidase domain-containing protein [Streptomyc...
| 1236 | 3.6e-164 |
| WP_075031432.1 | trypsin-like peptidase domain-containing protein [Streptomyc...
| 1235 | 4.5e-164 |
| WP_143602258.1 | MULTISPECIES: trypsin-like peptidase domain-containing prote...
| 1236 | 4.6e-164 |
| WP_067376893.1 | trypsin-like peptidase domain-containing protein [Streptomyc...
| 1235 | 6.0e-164 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.3718 | Seems to have no N-terminal signal seq.
|