| ID | SAVERM_4241
| Type | CDS
|
| From | 5199736
| nt length | 2085
|
| To | 5201820
| aa length | 694
|
| Gene | copC
| pI | 5.74
|
| Definition | putative copper resistance protein, secreted
| M.W (Da) | 70907
|
| Note | PF04234: Copper resistance protein CopC
| AseI frg. | H
|
| SignalP v.4.0 | Signal peptide | plot
| Category | detoxification
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3964 putative integral membrane protein | 694 | 0.0e+00
|
| sgr | SGR_3627 putative integral membrane protein | 665 | 0.0e+00
|
| sam | SAM23877_3700 conserved membrane protein of unknown function | 759 | 0.0e+00
|
| scab | SCAB46591 putative copper resistance protein, secreted | 797 | 0.0e+00
|
| sace | SACE_2474 putative integral membrane protein | 93 | 1.0e-20
|
| nfar | nfa1100 hypothetical protein | 80 | 5.9e-16
|
| cglu | gi|19552884 COG2372:Uncharacterized protein, homolog of Cu resistance protein CopC [Corynebacterium glutamicum] | 46 | 5.1e-06
|
| bsub | BG12046 ycnJ; similar to copper export protein | 119 | 5.9e-28
|
| ecoli | gi|16129794 hypothetical protein b1841 [Escherichia coli K12] | 60 | 4.8e-10
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| CopC | 1 | CopC domain | 25-119 | 85.7 | 3.2e-24
|
| CopD | 1 | Copper resistance protein D | 353-422 | 68.1 | 6.8e-19
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202498227.1 | copper resistance protein CopC/CopD [Streptomyces sp. SID546...
| 2044 | 0.0e+00 |
| WP_099502148.1 | MULTISPECIES: copper resistance protein CopC/CopD [Streptomy...
| 1176 | 4.2e-149 |
| WP_206439952.1 | copper resistance protein CopC [Streptomyces scabichelini]
| 1158 | 2.4e-147 |
| NGO10662.1 | copper resistance protein CopC/CopD [Streptomyces scabichelini]
| 1158 | 3.2e-147 |
| WP_217457185.1 | copper resistance protein CopC [Streptomyces sp. BV286] >lcl...
| 1138 | 8.6e-144 |
| WP_127827475.1 | copper resistance protein CopC [Streptomyces sp. San01] >gb
| 1137 | 1.5e-143 |
| WP_151478848.1 | copper resistance protein CopC/CopD [Streptomyces albicerus]
| 1134 | 2.0e-143 |
| WP_229379196.1 | copper resistance protein CopC [Streptomyces sp. VRA16 Mangr...
| 1132 | 2.2e-143 |
|
| 1132 | 3.0e-143 |
| WP_143643372.1 | copper resistance protein CopC [Streptomyces sp. IB201691-2A...
| 1132 | 5.5e-143 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.5373 | Seems to have a cleavable N-term signal seq.
|