| ID | SAVERM_4244
| Type | CDS
|
| From | 5204797
| nt length | 1278
|
| To | 5206074
| aa length | 425
|
| Gene | serS1
| pI | 4.97
|
| Definition | putative seryl-tRNA synthetase
| M.W (Da) | 47241
|
| Note | PF00587: tRNA synthetase class II core domain (G, H, P, S and T)
| AseI frg. | H
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | aminoacyl-tRNA-synthetase
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3961 seryl-tRNA synthase | 713 | 0.0e+00
|
| sgr | SGR_3630 putative seryl-tRNA synthase | 780 | 0.0e+00
|
| sam | SAM23877_3704 Serine--tRNA ligase | 710 | 0.0e+00
|
| scab | SCAB46561 putative seryl-tRNA synthetase | 725 | 0.0e+00
|
| sace | SACE_0158 seryl-tRNA synthetase | 488 | 4.0e-173
|
| nfar | nfa1400 serS seryl-tRNA synthase | 513 | 1.6e-146
|
| mtub | gi|15610970 seryl-tRNA synthetase [Mycobacterium tuberculosis H37Rv] | 488 | 4.1e-139
|
| cglu | gi|19554081 COG0172:Seryl-tRNA synthetase [Corynebacterium glutamicum] | 493 | 9.0e-141
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| tRNA-synt_2b | 1 | tRNA synthetase class II core domain (G, H, P, S and T) | 221-397 | 103.8 | 9.1e-30
|
| Seryl_tRNA_N | 1 | Seryl-tRNA synthetase N-terminal domain | 1-106 | 87.8 | 4.9e-25
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1786 | Seems to have no N-terminal signal seq.
|