| ID | SAVERM_4285
| Type | CDS
|
| From | 5251914
| nt length | 1347
|
| To | 5253260
| aa length | 448
|
| Gene | dinF
| pI | 10.31
|
| Definition | putative DNA-damage-inducible protein F
| M.W (Da) | 45989
|
| Note | PF01554: MatE
| AseI frg. | H
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA modification & repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3910 hypothetical protein | 698 | 0.0e+00
|
| sgr | SGR_3670 putative DNA-damage-inducible protein F | 688 | 0.0e+00
|
| sam | SAM23877_3746 conserved membrane protein of unknown function | 719 | 0.0e+00
|
| scab | SCAB46141 putative DNA-damage-inducible protein F | 684 | 0.0e+00
|
| sace | SACE_5921 DNA-damage-inducible protein F | 239 | 4.0e-75
|
| nfar | nfa40630 dinF DNA-damage-inducible protein F | 285 | 7.4e-78
|
| mtub | gi|15609973 POSSIBLE DNA-DAMAGE-INDUCIBLE PROTEIN F DINF [Mycobacterium tuberculosis H37Rv] | 291 | 4.6e-80
|
| cglu | gi|19553186 COG0534:Na+-driven multidrug efflux pump [Corynebacterium glutamicum] | 255 | 2.6e-69
|
| ecoli | gi|16131870 DNA-damage-inducible protein F [Escherichia coli K12] | 158 | 7.9e-40
|
| paer | PA4821 [gene=PA4821] [prot=probable transporter] [comment=PA4821] | 152 | 5.9e-38
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| MatE | 2 | MatE | 28-188, 246-399 | 173.3 | 2.8e-51
|
| Polysacc_synt_C | 1 | Polysaccharide biosynthesis C-terminal domain | 141-246 | 30.2 | 3.8e-07
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| GHH05605.1 | MATE family efflux transporter [Streptomyces lanatus]
| 1300 | 7.7e-175 |
| WP_132835714.1 | MATE family efflux transporter [Streptomyces sp. BK205]
| 1295 | 3.3e-174 |
| WP_062025639.1 | MATE family efflux transporter [Streptomyces griseorubiginos...
| 1295 | 3.7e-174 |
|
| 1296 | 4.1e-174 |
| WP_128435526.1 | MATE family efflux transporter [Streptomyces cyaneus]
| 1293 | 6.5e-174 |
| WP_120051657.1 | MATE family efflux transporter [Streptomyces griseorubiginos...
| 1292 | 1.0e-173 |
| WP_020134130.1 | MATE family efflux transporter [Streptomyces sp. 351MFTsu5.1...
| 1291 | 1.3e-173 |
| AYC40037.1 | DNA damage-inducible protein F [Streptomyces griseorubiginosus]
| 1292 | 1.8e-173 |
| WP_119106158.1 | MATE family efflux transporter [Streptomyces sporangiiforman...
| 1289 | 3.1e-173 |
| GGX45156.1 | MATE family efflux transporter [Streptomyces chartreusis]
| 1287 | 7.1e-173 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.5288 | Seems to have no N-terminal signal seq.
|