| ID | SAVERM_4287
| Type | CDS
|
| From | 5254159
| nt length | 237
|
| To | 5253923
| aa length | 78
|
| Gene | rpsR1
| pI | 11.05
|
| Definition | putative ribosomal protein S18
| M.W (Da) | 8989
|
| Note | PF01084: Ribosomal protein S18
| AseI frg. | H
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3908 putative 30S ribosomal protein S18 | 160 | 2.0e-54
|
| sgr | SGR_3672 putative 30S ribosomal protein S18 | 133 | 1.0e-43
|
| sam | SAM23877_3748 30S ribosomal subunit protein S18 | 160 | 2.0e-54
|
| scab | SCAB46121 putative ribosomal protein S18 | 160 | 2.0e-54
|
| sace | SACE_7349 30S ribosomal subunit protein S18 | 136 | 7.0e-45
|
| nfar | nfa55740 rpsR ribosomal protein S18 | 113 | 2.3e-27
|
| mtub | gi|57116686 30S ribosomal protein S18 [Mycobacterium tuberculosis H37Rv] | 103 | 2.1e-24
|
| bsub | BG10047 rpsR; 30S ribosomal protein S18 | 81 | 6.3e-18
|
| ecoli | gi|16132024 30S ribosomal protein S18 [Escherichia coli K12] | 61 | 9.4e-12
|
| paer | PA4934 [gene=rpsR] [prot=30S ribosomal protein S18] [comment=PA4934] | 68 | 6.6e-14
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_S18 | 1 | Ribosomal protein S18 | 21-71 | 84.2 | 4.9e-24
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_100570506.1 | 30S ribosomal protein S18 [Streptomyces sp. CB01373] >gb
| 346 | 2.2e-41 |
| WP_077798211.1 | 30S ribosomal protein S18 [Streptomyces sp. JHA26]
| 345 | 3.6e-41 |
| WP_067397804.1 | MULTISPECIES: 30S ribosomal protein S18 [Streptomyces]
| 343 | 5.0e-41 |
| ALM40182.1 | putative 30S ribosomal protein S18 2 [Streptomyces sp. FR-008] >g...
| 343 | 5.2e-41 |
| WP_014143881.1 | MULTISPECIES: 30S ribosomal protein S18 [Streptomyces] >gb
| 343 | 6.4e-41 |
| WP_130439187.1 | 30S ribosomal protein S18 [Streptomyces sp. BK239] >gb
| 341 | 1.1e-40 |
| WP_008746874.1 | MULTISPECIES: 30S ribosomal protein S18 [unclassified Strept...
| 341 | 1.2e-40 |
| BDD73422.1 | 30S ribosomal protein S18 1 [Streptomyces coelicolor]
| 340 | 1.4e-40 |
| WP_128983236.1 | 30S ribosomal protein S18 [Streptomyces roseicoloratus]
| 340 | 1.6e-40 |
| WP_031084677.1 | 30S ribosomal protein S18 [Streptomyces sp. NRRL S-1831]
| 340 | 1.6e-40 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3344 | Seems to have no N-terminal signal seq.
|