| ID | SAVERM_4288
| Type | CDS
|
| From | 5254825
| nt length | 609
|
| To | 5254217
| aa length | 202
|
| Gene | ssb1
| pI | 5.01
|
| Definition | putative single-stranded DNA-binding protein
| M.W (Da) | 20244
|
| Note | PF00436: Single-strand binding protein family
| AseI frg. | H
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA replication
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3907 putative single-strand binding protein | 257 | 1.0e-88
|
| sgr | SGR_3673 putative single-stranded DNA-binding protein | 261 | 3.0e-90
|
| sam | SAM23877_3749 Single-stranded DNA-binding protein 2 | 256 | 1.0e-88
|
| scab | SCAB46111 putative single-stranded DNA-binding protein | 259 | 1.0e-89
|
| sace | SACE_7350 single-strand DNA-binding protein | 182 | 4.0e-60
|
| nfar | nfa55730 ssb single-strand binding protein | 228 | 2.8e-61
|
| mtub | gi|15607196 single-strand DNA-binding protein [Mycobacterium tuberculosis H37Rv] | 204 | 3.4e-54
|
| cglu | gi|19554175 COG0629:Single-stranded DNA-binding protein [Corynebacterium glutamicum] | 216 | 6.1e-58
|
| bsub | BG10048 ssb; single-strand binding protein | 100 | 4.6e-23
|
| ecoli | gi|16131885 single-strand DNA-binding protein [Escherichia coli K12] | 81 | 4.3e-17
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| SSB | 1 | Single-strand binding protein family | 7-107 | 104.7 | 2.1e-30
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_081218313.1 | single-stranded DNA-binding protein [Streptomyces sp. M41(20...
| 711 | 3.9e-93 |
| WP_058850014.1 | MULTISPECIES: single-stranded DNA-binding protein [Streptomy...
| 708 | 1.1e-92 |
| WP_168529029.1 | single-stranded DNA-binding protein [Streptomyces sp. RPA4-2...
| 708 | 1.2e-92 |
| WP_190118557.1 | single-stranded DNA-binding protein [Streptomyces flavofungi...
| 706 | 2.7e-92 |
| WP_200397043.1 | single-stranded DNA-binding protein [Streptomyces sp. ZYC-3]...
| 703 | 6.8e-92 |
| WP_030608033.1 | single-stranded DNA-binding protein [Streptomyces fulvoviola...
| 701 | 1.3e-91 |
| WP_223775639.1 | single-stranded DNA-binding protein [Streptomyces sp. 135]
| 700 | 2.0e-91 |
| WP_160506090.1 | single-stranded DNA-binding protein [Streptomyces sp. BA2] >...
| 699 | 2.7e-91 |
| WP_030559715.1 | single-stranded DNA-binding protein [Streptomyces aureocircu...
| 698 | 3.0e-91 |
| WP_030357786.1 | MULTISPECIES: single-stranded DNA-binding protein [Streptomy...
| 697 | 4.5e-91 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.0384 | Seems to have no N-terminal signal seq.
|