| ID | SAVERM_4289
| Type | CDS
|
| From | 5255195
| nt length | 291
|
| To | 5254905
| aa length | 96
|
| Gene | rpsF
| pI | 6.54
|
| Definition | putative ribosomal protein S6
| M.W (Da) | 11201
|
| Note | PF01250: Ribosomal protein S6
| AseI frg. | H
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3906 putative 30S ribosomal protein S6 | 187 | 3.0e-64
|
| sgr | SGR_3674 putative 30S ribosomal protein S6 | 189 | 4.0e-65
|
| sam | SAM23877_3750 30S ribosomal protein S6 | 187 | 3.0e-64
|
| scab | SCAB46101 putative ribosomal protein S6 | 193 | 1.0e-66
|
| sace | SACE_7351 30S ribosomal protein S6 | 142 | 3.0e-46
|
| nfar | nfa55720 rpsF ribosomal protein S6 | 137 | 1.8e-34
|
| mtub | gi|15607195 30S ribosomal protein S6 [Mycobacterium tuberculosis H37Rv] | 134 | 8.8e-34
|
| cglu | gi|19554176 COG0360:Ribosomal protein S6 [Corynebacterium glutamicum] | 119 | 2.6e-29
|
| bsub | BG10049 rpsF; 30S ribosomal protein S6 | 74 | 7.2e-16
|
| ecoli | gi|16132022 30S ribosomal protein S6 [Escherichia coli K12] | 70 | 1.6e-14
|
| paer | PA4935 [gene=rpsF] [prot=30S ribosomal protein S6] [comment=PA4935] | 67 | 2.4e-13
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_S6 | 1 | Ribosomal protein S6 | 3-92 | 99.0 | 1.3e-28
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_073787253.1 | MULTISPECIES: 30S ribosomal protein S6 [Streptomyces] >lcl
| 492 | 4.4e-63 |
| WP_004950685.1 | MULTISPECIES: 30S ribosomal protein S6 [Streptomyces] >gb
| 490 | 7.8e-63 |
| WP_005482942.1 | MULTISPECIES: 30S ribosomal protein S6 [Streptomyces] >lcl
| 490 | 7.8e-63 |
| WP_067162183.1 | MULTISPECIES: 30S ribosomal protein S6 [Streptomyces] >lcl
| 490 | 8.2e-63 |
| WP_073727694.1 | 30S ribosomal protein S6 [Streptomyces sp. TSRI0281] >gb
| 489 | 1.0e-62 |
| WP_010353482.1 | MULTISPECIES: 30S ribosomal protein S6 [Streptomyces] >lcl
| 489 | 1.0e-62 |
| WP_030827724.1 | MULTISPECIES: 30S ribosomal protein S6 [Streptomyces] >lcl
| 489 | 1.1e-62 |
| WP_040251303.1 | MULTISPECIES: 30S ribosomal protein S6 [Streptomyces] >gb
| 489 | 1.1e-62 |
| WP_052578287.1 | MULTISPECIES: 30S ribosomal protein S6 [unclassified Strepto...
| 488 | 1.3e-62 |
| WP_164559357.1 | 30S ribosomal protein S6 [Streptomyces sp. SID14478] >gb
| 488 | 1.5e-62 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3041 | Seems to have no N-terminal signal seq.
|