| ID | SAVERM_4308
| Type | CDS
|
| From | 5280604
| nt length | 1104
|
| To | 5279501
| aa length | 367
|
| Gene | parB
| pI | 5.35
|
| Definition | putative ParB homolog
| M.W (Da) | 39148
|
| Note | Tat substrate, PF02195: ParB-like nuclease domain
| AseI frg. | H
|
| SignalP v.4.0 | Signal peptide | plot
| Category | miscellaneous
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3887 putative partitioning or sporulation protein | 491 | 2.0e-176
|
| sgr | SGR_3692 putative ParB homologue | 491 | 7.0e-176
|
| sam | SAM23877_3771 putative chromosome-partitioning protein ParB | 540 | 0.0e+00
|
| scab | SCAB45901 putative partitioning protein | 515 | 0.0e+00
|
| sace | SACE_7390 chromosome partitioning | 301 | 2.0e-102
|
| nfar | nfa56660 parB chromosome partitioning protein | 336 | 1.7e-93
|
| mtub | gi|57117170 PROBABLE CHROMOSOME PARTITIONING PROTEIN PARB [Mycobacterium tuberculosis H37Rv] | 315 | 4.0e-87
|
| cglu | gi|19554284 COG1475:Predicted transcriptional regulators [Corynebacterium glutamicum] | 290 | 5.7e-80
|
| bsub | BG10054 spo0J; stage 0 sporulation protein J | 198 | 3.6e-52
|
| ecoli | gi|16129326 Rac prophage [Escherichia coli K12] | 40 | 2.5e-04
|
| paer | PA5562 [gene=spoOJ] [prot=chromosome partitioning protein Spo0J] [comment=PA5562] | 193 | 1.8e-50
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| ParBc | 1 | ParB-like nuclease domain | 88-176 | 88.2 | 3e-25
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202498240.1 | ParB/RepB/Spo0J family partition protein [Streptomyces sp. S...
| 1610 | 0.0e+00 |
| WP_099502034.1 | MULTISPECIES: ParB/RepB/Spo0J family partition protein [Stre...
| 1478 | 0.0e+00 |
| WP_143641356.1 | ParB/RepB/Spo0J family partition protein [Streptomyces sp. I...
| 1468 | 0.0e+00 |
| WP_234516297.1 | ParB/RepB/Spo0J family partition protein [Streptomyces glome...
| 1466 | 0.0e+00 |
| NUQ95914.1 | ParB/RepB/Spo0J family partition protein [Streptomyces sp.]
| 1464 | 0.0e+00 |
| WP_030938937.1 | MULTISPECIES: ParB/RepB/Spo0J family partition protein [uncl...
| 1463 | 0.0e+00 |
| WP_055493953.1 | ParB/RepB/Spo0J family partition protein [Streptomyces sp. T...
| 1457 | 0.0e+00 |
| WP_069759540.1 | ParB/RepB/Spo0J family partition protein [Streptomyces sp. L...
| 1457 | 0.0e+00 |
| WP_033321303.1 | ParB/RepB/Spo0J family partition protein [Streptomyces yerev...
| 1455 | 0.0e+00 |
| WP_190038074.1 | ParB/RepB/Spo0J family partition protein [Streptomyces fruct...
| 1454 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| outside | 0.3000 | Seems to have a cleavable N-term signal seq.
|