| ID | SAVERM_4312
| Type | CDS
|
| From | 5284668
| nt length | 1287
|
| To | 5283382
| aa length | 428
|
| Gene | yidC1
| pI | 10.86
|
| Definition | putative preprotein translocase YidC subunit
| M.W (Da) | 46982
|
| Note | PF02096: 60Kd inner membrane protein
| AseI frg. | H
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | protein secretion
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3883 putative membrane protein | 717 | 0.0e+00
|
| sgr | SGR_3696 putative membrane protein | 633 | 0.0e+00
|
| sam | SAM23877_3775 Membrane protein insertase YidC | 728 | 0.0e+00
|
| scab | SCAB45861 putative preprotein translocase YidC subunit | 699 | 0.0e+00
|
| sace | SACE_7394 preprotein translocase YidC subunit | 169 | 1.0e-49
|
| nfar | nfa56700 membrane protein | 175 | 7.8e-45
|
| mtub | gi|15611057 putative inner membrane protein translocase component YidC [Mycobacterium tuberculosis H37Rv] | 160 | 2.0e-40
|
| cglu | gi|19554287 COG0706:Preprotein translocase subunit YidC [Corynebacterium glutamicum] | 142 | 2.3e-35
|
| bsub | BG10062 spoIIIJ, spo0J87; stage III sporulation protein J, essential for sigma-G activity at stage III | 115 | 4.9e-27
|
| ecoli | gi|16131573 inner membrane protein translocase component YidC [Escherichia coli K12] | 108 | 8.9e-25
|
| paer | PA5568 [gene=PA5568] [prot=conserved hypothetical protein] [comment=PA5568] | 112 | 6.5e-26
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| 60KD_IMP | 1 | 60Kd inner membrane protein | 38-255 | 197.2 | 1.6e-58
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_189187132.1 | membrane protein insertase YidC [Streptomyces albiflavescens...
| 1749 | 0.0e+00 |
| WP_095935443.1 | membrane protein insertase YidC [Streptomyces sp. Tue6028] >...
| 1747 | 0.0e+00 |
| WP_028804108.1 | membrane protein insertase YidC [Streptomyces sp. 142MFCol3....
| 1742 | 0.0e+00 |
| NEB31846.1 | membrane protein insertase YidC [Streptomyces sp. SID14446]
| 1731 | 0.0e+00 |
| WP_075031494.1 | membrane protein insertase YidC [Streptomyces mirabilis] >em...
| 1728 | 0.0e+00 |
| QIY97058.1 | membrane protein insertase YidC [Streptomyces sp. S1D4-11]
| 1727 | 0.0e+00 |
| WP_222811367.1 | MULTISPECIES: membrane protein insertase YidC [unclassified ...
| 1725 | 0.0e+00 |
| WP_128802399.1 | MULTISPECIES: membrane protein insertase YidC [unclassified ...
| 1723 | 0.0e+00 |
| WP_016437042.1 | membrane protein insertase YidC [Streptomyces sp. HGB0020] >...
| 1723 | 0.0e+00 |
| WP_168529050.1 | membrane protein insertase YidC [Streptomyces sp. RPA4-2] >g...
| 1720 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.5628 | Seems to have a cleavable N-term signal seq.
|