| ID | SAVERM_4314
| Type | CDS
|
| From | 5285393
| nt length | 372
|
| To | 5285022
| aa length | 123
|
| Gene | rnpA
| pI | 12.42
|
| Definition | putative RNase P component
| M.W (Da) | 13184
|
| Note | PF00825: Ribonuclease P
| AseI frg. | H
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | RNA modification
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3881 putative ribonuclease P component | 196 | 3.0e-67
|
| sgr | SGR_3698 putative RNase P component | 189 | 3.0e-64
|
| sam | SAM23877_3777 Ribonuclease P protein component | 199 | 3.0e-68
|
| sace | SACE_7396 putative RNase P component | 85 | 3.0e-23
|
| nfar | nfa56720 rnpA RNase P component | 91 | 2.2e-20
|
| mtub | gi|15611059 ribonuclease P [Mycobacterium tuberculosis H37Rv] | 72 | 8.4e-15
|
| cglu | gi|19554288 COG0594:RNase P protein component [Corynebacterium glutamicum] | 82 | 5.9e-18
|
| bsub | BG10063 rnpA; ribonuclease P protein component [EC:3.1.26.5] | 40 | 3.1e-05
|
| ecoli | gi|16131572 ribonuclease P [Escherichia coli K12] | 36 | 6.6e-04
|
| paer | PA5569 [gene=rnpA] [prot=ribonuclease P protein component] [comment=PA5569] | 33 | 4.3e-03
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribonuclease_P | 1 | Ribonuclease P | 2-117 | 101.3 | 2.8e-29
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_124440733.1 | ribonuclease P protein component [Streptomyces sp. NL15-2K]
| 389 | 1.3e-46 |
| WP_095755979.1 | ribonuclease P protein component [Streptomyces sp. SA15] >gb...
| 389 | 1.4e-46 |
| WP_079078065.1 | MULTISPECIES: ribonuclease P protein component [unclassified...
| 388 | 1.7e-46 |
| WP_078912589.1 | MULTISPECIES: ribonuclease P protein component [unclassified...
| 388 | 1.7e-46 |
| WP_150945306.1 | ribonuclease P protein component [Streptomyces luteolifulvus...
| 388 | 1.9e-46 |
| WP_151477253.1 | ribonuclease P protein component [Streptomyces albicerus]
| 388 | 2.2e-46 |
| WP_086806656.1 | ribonuclease P protein component [Streptomyces murinus]
| 386 | 3.8e-46 |
| WP_079173071.1 | MULTISPECIES: ribonuclease P protein component [Streptomyces...
| 385 | 4.5e-46 |
| WP_128790864.1 | MULTISPECIES: ribonuclease P protein component [Streptomyces...
| 385 | 4.5e-46 |
| WP_078963609.1 | ribonuclease P protein component [Streptomyces durhamensis]
| 385 | 4.5e-46 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3007 | Seems to have no N-terminal signal seq.
|