| ID | SAVERM_4315
| Type | CDS
|
| From | 5285549
| nt length | 138
|
| To | 5285412
| aa length | 45
|
| Gene | rpmH
| pI | couldn't calculate
|
| Definition | putative ribosomal protein L34
| M.W (Da) | 5183
|
| Note | PF00468: Ribosomal protein L34
| AseI frg. | H
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3880 putative 50S ribosomal protein L34 | 80 | 1.0e-23
|
| sgr | SGR_3699 50S ribosomal protein L34 | 84 | 7.0e-25
|
| sam | SAM23877_3778 50S ribosomal subunit protein L34 | 80 | 1.0e-23
|
| scab | SCAB45841 putative ribosomal protein L34 | 82 | 2.0e-24
|
| sace | SACE_7397 50S ribosomal protein L34 | 58 | 7.0e-15
|
| nfar | nfa56730 rpmH ribosomal protein L34 | 75 | 7.7e-16
|
| mtub | gi|15611060 50S ribosomal protein L34 [Mycobacterium tuberculosis H37Rv] | 74 | 1.1e-15
|
| cglu | gi|19554289 hypothetical protein, predicted by GeneMark hmm [Corynebacterium glutamicum] | 76 | 2.4e-16
|
| bsub | BG10064 rpmH; 50S ribosomal protein L34 | 62 | 5.9e-12
|
| ecoli | gi|16131571 50S ribosomal protein L34 [Escherichia coli K12] | 54 | 1.5e-09
|
| paer | PA5570 [gene=rpmH] [prot=50S ribosomal protein L34] [comment=PA5570] | 54 | 1.9e-09
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L34 | 1 | Ribosomal protein L34 | 3-45 | 70.6 | 7.1e-20
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_143940007.1 | MULTISPECIES: 50S ribosomal protein L34 [unclassified Strept...
| 209 | 1.6e-21 |
| WP_116212844.1 | 50S ribosomal protein L34 [Streptomyces olivoreticuli]
| 209 | 1.6e-21 |
| WP_030059672.1 | MULTISPECIES: 50S ribosomal protein L34 [Actinomycetia] >gb
| 209 | 1.9e-21 |
| WP_030930485.1 | MULTISPECIES: 50S ribosomal protein L34 [Streptomyces] >gb
| 208 | 2.0e-21 |
| WP_006381191.1 | MULTISPECIES: 50S ribosomal protein L34 [Streptomyces] >gb
| 208 | 2.0e-21 |
| WP_035847219.1 | 50S ribosomal protein L34 [Kitasatospora azatica]
| 206 | 4.1e-21 |
| WP_104817273.1 | 50S ribosomal protein L34 [Kitasatospora sp. MMS16-BH015] >g...
| 206 | 4.1e-21 |
| WP_006348049.1 | MULTISPECIES: 50S ribosomal protein L34 [Streptomycetaceae] ...
| 206 | 4.2e-21 |
| WP_110665821.1 | 50S ribosomal protein L34 [Streptomyces tateyamensis] >gb
| 206 | 5.1e-21 |
| WP_030305394.1 | MULTISPECIES: 50S ribosomal protein L34 [Streptomycetaceae] ...
| 206 | 5.1e-21 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.4534 | Seems to have no N-terminal signal seq.
|