| ID | SAVERM_4317
| Type | CDS
|
| From | 5289024
| nt length | 1131
|
| To | 5290154
| aa length | 376
|
| Gene | dnaN1
| pI | 4.33
|
| Definition | putative DNA polymerase III beta subunit
| M.W (Da) | 39721
|
| Note | PF00712: DNA polymerase III beta subunit, N-terminal domain
| AseI frg. | H
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA replication
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3878 dnaN DNA polymerase III beta chain | 707 | 0.0e+00
|
| sgr | SGR_3701 putative DNA polymerase III beta subunit | 694 | 0.0e+00
|
| sam | SAM23877_3780 DNA polymerase III subunit beta | 669 | 0.0e+00
|
| scab | SCAB45811 putative DNA polymerase III beta subunit | 703 | 0.0e+00
|
| sace | SACE_0003 DNA polymerase III beta subunit | 421 | 3.0e-148
|
| nfar | nfa20 dnaN DNA polymerase III beta subunit | 382 | 3.6e-107
|
| mtub | gi|15607144 DNA polymerase III subunit beta [Mycobacterium tuberculosis H37Rv] | 375 | 2.0e-105
|
| cglu | gi|19551252 COG0592:DNA polymerase sliding clamp subunit (PCNA homolog) [Corynebacterium glutamicum] | 332 | 1.3e-92
|
| bsub | BG10066 dnaN, dnaG, dnaK; DNA polymerase III beta subunit [EC:2.7.7.7] | 154 | 8.1e-39
|
| ecoli | gi|16131569 DNA polymerase III subunit beta [Escherichia coli K12] | 135 | 4.4e-33
|
| paer | PA0002 [gene=dnaN] [prot=DNA polymerase III, beta chain] [comment=PA0002] | 142 | 5.0e-35
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DNA_pol3_beta | 2 | DNA polymerase III beta subunit, N-terminal domain | 1-118, 130-218 | 172.3 | 3.4e-51
|
| DNA_pol3_beta_3 | 1 | DNA polymerase III beta subunit, C-terminal domain | 248-372 | 133.2 | 3.8e-39
|
| DNA_pol3_beta_2 | 1 | DNA polymerase III beta subunit, central domain | 127-246 | 123.0 | 6.6e-36
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_058924298.1 | MULTISPECIES: DNA polymerase III subunit beta [unclassified ...
| 1501 | 0.0e+00 |
| WP_150169944.1 | DNA polymerase III subunit beta [Streptomyces venezuelae] >g...
| 1497 | 0.0e+00 |
| WP_016437045.1 | DNA polymerase III subunit beta [Streptomyces sp. HGB0020] >...
| 1496 | 0.0e+00 |
| WP_194049536.1 | DNA polymerase III subunit beta [Streptomyces ferrugineus] >...
| 1495 | 0.0e+00 |
| WP_235451758.1 | DNA polymerase III subunit beta [Streptomyces olivochromogen...
| 1495 | 0.0e+00 |
| WP_189931538.1 | DNA polymerase III subunit beta [Streptomyces aurantiogriseu...
| 1494 | 0.0e+00 |
| WP_046727617.1 | DNA polymerase III subunit beta [Streptomyces humi]
| 1494 | 0.0e+00 |
| WP_019887851.1 | DNA polymerase III subunit beta [Streptomyces purpureus] >db...
| 1493 | 0.0e+00 |
| WP_190071244.1 | DNA polymerase III subunit beta [Streptomyces lanatus] >dbj
| 1493 | 0.0e+00 |
| WP_220647685.1 | DNA polymerase III subunit beta [Streptomyces sp. MG28] >gb
| 1493 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.0571 | Seems to have no N-terminal signal seq.
|