| ID | SAVERM_4319
| Type | CDS
|
| From | 5291312
| nt length | 1122
|
| To | 5292433
| aa length | 373
|
| Gene | recF
| pI | 7.26
|
| Definition | putative DNA recombination and repair protein
| M.W (Da) | 40899
|
| Note | PF02463: RecF/RecN/SMC N terminal domain
| AseI frg. | H
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA recombination
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3876 recF DNA replication protein | 700 | 0.0e+00
|
| sgr | SGR_3703 putative DNA recombination and repair protein | 644 | 0.0e+00
|
| sam | SAM23877_3782 DNA replication and repair protein RecF | 697 | 0.0e+00
|
| scab | SCAB45791 putative DNA recombination and repair protein | 679 | 0.0e+00
|
| sace | SACE_0005 DNA replication and repair protein | 449 | 5.0e-159
|
| nfar | nfa30 recF recombination and repair protein | 410 | 1.2e-115
|
| mtub | gi|15607145 recombination protein F [Mycobacterium tuberculosis H37Rv] | 378 | 3.0e-106
|
| cglu | gi|19551253 COG1195:Recombinational DNA repair ATPase (RecF pathway) [Corynebacterium glutamicum] | 365 | 1.8e-102
|
| bsub | BG10068 recF; DNA repair and genetic recombination protein | 187 | 1.1e-48
|
| ecoli | gi|16131568 recombination protein F [Escherichia coli K12] | 101 | 9.2e-23
|
| paer | PA0003 [gene=recF] [prot=RecF protein] [comment=PA0003] | 101 | 9.6e-23
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| SMC_N | 1 | RecF/RecN/SMC N terminal domain | 3-348 | 68.1 | 6.5e-19
|
| AAA_23 | 1 | AAA domain | 6-92 | 40.4 | 4.1e-10
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_069759534.1 | DNA replication/repair protein RecF [Streptomyces sp. LUP47B...
| 1835 | 0.0e+00 |
| WP_053755784.1 | DNA replication/repair protein RecF [Streptomyces sp. MMG153...
| 1833 | 0.0e+00 |
| WP_126393505.1 | DNA replication/repair protein RecF [Streptomyces cyaneochro...
| 1830 | 0.0e+00 |
| WP_055621063.1 | DNA replication/repair protein RecF [Streptomyces sp. JHA19]
| 1830 | 0.0e+00 |
| WP_030042218.1 | DNA replication/repair protein RecF [Streptomyces resistomyc...
| 1829 | 0.0e+00 |
| WP_115504415.1 | DNA replication/repair protein RecF [Streptomyces sp. M7] >g...
| 1829 | 0.0e+00 |
| WP_086866476.1 | DNA replication/repair protein RecF [Streptomyces viridochro...
| 1828 | 0.0e+00 |
| WP_151784939.1 | DNA replication/repair protein RecF [Streptomyces sp. SS1-1]...
| 1828 | 0.0e+00 |
| WP_210980464.1 | DNA replication/repair protein RecF [Streptomyces sp. RK62] ...
| 1826 | 0.0e+00 |
| WP_053197090.1 | DNA replication/repair protein RecF [Streptomyces viridochro...
| 1826 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2358 | Seems to have no N-terminal signal seq.
|