| ID | SAVERM_4321
| Type | CDS
|
| From | 5293712
| nt length | 2079
|
| To | 5295790
| aa length | 692
|
| Gene | gyrB
| pI | 4.87
|
| Definition | putative DNA gyrase subunit B
| M.W (Da) | 75831
|
| Note | PF00204: DNA gyrase B
| AseI frg. | H
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA packaging & segregation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3874 gyrB DNA gyrase subunit B | 1272 | 0.0e+00
|
| sgr | SGR_3705 DNA gyrase subunit B | 1218 | 0.0e+00
|
| sam | SAM23877_3784 DNA gyrase subunit B | 1269 | 0.0e+00
|
| scab | SCAB45761 putative DNA gyrase subunit B | 1258 | 0.0e+00
|
| sace | SACE_0008 DNA gyrase subunit B | 822 | 0.0e+00
|
| nfar | nfa60 gyrB DNA gyrase B subunit | 892 | 0.0e+00
|
| mtub | gi|15607147 DNA topoisomerase IV subunit B [Mycobacterium tuberculosis H37Rv] | 870 | 0.0e+00
|
| cglu | gi|19551255 COG0187:DNA gyrase (topoisomerase II) B subunit [Corynebacterium glutamicum] | 813 | 0.0e+00
|
| bsub | BG10070 gyrB, novA; DNA gyrase subunit B [EC:5.99.1.3] | 706 | 0.0e+00
|
| ecoli | gi|49176395 DNA gyrase subunit B [Escherichia coli K12] | 565 | 4.6e-162
|
| paer | PA0004 [gene=gyrB] [prot=DNA gyrase subunit B] [comment=PA0004] | 546 | 2.3e-156
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DNA_gyraseB | 1 | DNA gyrase B | 271-443 | 211.4 | 5.7e-63
|
| DNA_gyraseB_C | 1 | DNA gyrase B subunit, carboxyl terminus | 623-681 | 86.8 | 7.7e-25
|
| HATPase_c | 1 | Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase | 66-207 | 68.5 | 6.2e-19
|
| Toprim | 1 | Toprim domain | 472-582 | 63.4 | 1.7e-17
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202498243.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptomyces ...
| 3299 | 0.0e+00 |
| WP_099925533.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptomyces ...
| 3174 | 0.0e+00 |
| GHD76724.1 | DNA gyrase subunit B [Streptomyces mirabilis]
| 3171 | 0.0e+00 |
| WP_180294005.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptomyces ...
| 3170 | 0.0e+00 |
| WP_211118757.1 | MULTISPECIES: DNA topoisomerase (ATP-hydrolyzing) subunit B ...
| 3169 | 0.0e+00 |
| WP_179858223.1 | MULTISPECIES: DNA topoisomerase (ATP-hydrolyzing) subunit B ...
| 3169 | 0.0e+00 |
| QIY97067.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptomyces sp. S...
| 3169 | 0.0e+00 |
| WP_177324351.1 | MULTISPECIES: DNA topoisomerase (ATP-hydrolyzing) subunit B ...
| 3167 | 0.0e+00 |
| QIY72180.1 | DNA topoisomerase (ATP-hydrolyzing) subunit B [Streptomyces sp. R...
| 3164 | 0.0e+00 |
| KPH99642.1 | DN...
| 3162 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.4345 | Seems to have no N-terminal signal seq.
|