| ID | SAVERM_4330
| Type | CDS
|
| From | 5307277
| nt length | 897
|
| To | 5308173
| aa length | 298
|
| Gene |
| pI | 8.86
|
| Definition | putative membrane protein
| M.W (Da) | 32192
|
| Note | PF01694: Rhomboid family
| AseI frg. | H
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | miscellaneous
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3855 putative membrane protein | 358 | 8.0e-126
|
| sgr | SGR_3717 putative membrane protein | 395 | 2.0e-140
|
| sam | SAM23877_3801 Rhomboid family serine protease | 372 | 6.0e-131
|
| scab | SCAB45641 putative membrane protein | 438 | 5.0e-157
|
| sace | SACE_0035 rhomboid-like protein | 110 | 2.0e-29
|
| nfar | nfa740 membrane protein | 152 | 4.5e-38
|
| mtub | gi|15607252 PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN [Mycobacterium tuberculosis H37Rv] | 192 | 3.0e-50
|
| bsub | BG11683 yqgP; similar to unknown proteins | 92 | 3.7e-20
|
| ecoli | gi|49176353 protein of glp regulon [Escherichia coli K12] | 46 | 2.6e-06
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Rhomboid | 1 | Rhomboid family | 129-265 | 118.2 | 2.7e-34
|
| zf-B_box | 1 | B-box zinc finger | 16-43 | 24.7 | 1.7e-05
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| MYS99921.1 | rhomboid family intramembrane serine protease [Streptomyces sp. S...
| 1441 | 0.0e+00 |
| WP_037647826.1 | unnamed protein product [Streptomyces sp. SID5469]
| 1419 | 0.0e+00 |
| QIY97075.1 | rhomboid family intramembrane serine protease [Streptomyces sp. S...
| 1249 | 7.2e-172 |
| WP_168493588.1 | MULTISPECIES: rhomboid family intramembrane serine protease ...
| 1237 | 5.2e-170 |
| WP_067376627.1 | rhomboid family intramembrane serine protease [Streptomyces ...
| 1234 | 1.4e-169 |
| WP_181650718.1 | rhomboid family intramembrane serine protease [Streptomyces ...
| 1229 | 9.1e-169 |
| WP_095853675.1 | rhomboid family intramembrane serine protease [Streptomyces ...
| 1227 | 1.3e-168 |
| WP_097285454.1 | MULTISPECIES: rhomboid family intramembrane serine protease ...
| 1225 | 3.1e-168 |
| WP_190174087.1 | MULTISPECIES: rhomboid family intramembrane serine protease ...
| 1224 | 4.5e-168 |
| WP_097225360.1 | rhomboid family intramembrane serine protease [Streptomyces ...
| 1222 | 1.0e-167 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.4248 | Seems to have no N-terminal signal seq.
|