| ID | SAVERM_4376
| Type | CDS
|
| From | 5356305
| nt length | 1221
|
| To | 5357525
| aa length | 406
|
| Gene | bkdF
| pI | 4.93
|
| Definition | putative branched-chain alpha keto acid dehydrogenase E1 alpha subunit
| M.W (Da) | 44475
|
| Note | PF00676: Dehydrogenase E1 component
| AseI frg. | H
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of lipids
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3817 putative branched-chain alpha keto acid dehydrogenase E1 alpha subunit | 671 | 0.0e+00
|
| sgr | SGR_3765 putative branched-chain alpha keto acid dehydrogenase E1 alpha subunit | 660 | 0.0e+00
|
| sam | SAM23877_3841 3-methyl-2-oxobutanoate dehydrogenase subunit alpha | 667 | 0.0e+00
|
| scab | SCAB45181 putative branched-chain alpha keto acid dehydrogenase E1 alpha subunit | 699 | 0.0e+00
|
| sace | SACE_7294 pyruvate dehydrogenase E1 component, alpha subunit | 432 | 4.0e-152
|
| nfar | nfa10210 branched-chain alpha-keto acid dehydrogenase component | 386 | 2.1e-108
|
| bsub | BG10207 pdhA, aceA; pyruvate dehydrogenase E1 component, alpha subunit [EC:1.2.4.1] | 216 | 2.5e-57
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; bsub, Bacillus subtilis;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| E1_dh | 1 | Dehydrogenase E1 component | 75-343 | 265.9 | 3.1e-79
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_189187073.1 | pyruvate dehydrogenase (acetyl-transferring) E1 component su...
| 1977 | 0.0e+00 |
| WP_095935501.1 | pyruvate dehydrogenase (acetyl-transferring) E1 component su...
| 1948 | 0.0e+00 |
|
| 1948 | 0.0e+00 |
| WP_168493684.1 | MULTISPECIES: pyruvate dehydrogenase (acetyl-transferring) E...
| 1946 | 0.0e+00 |
| QIY97138.1 | pyruvate dehydrogenase (acetyl-transferring) E1 component subunit...
| 1945 | 0.0e+00 |
| WP_096240552.1 | pyruvate dehydrogenase (acetyl-transferring) E1 component su...
| 1943 | 0.0e+00 |
| WP_028799327.1 | pyruvate dehydrogenase (acetyl-transferring) E1 component su...
| 1939 | 0.0e+00 |
| WP_217569905.1 | pyruvate dehydrogenase (acetyl-transferring) E1 component su...
| 1938 | 0.0e+00 |
| WP_190172677.1 | pyruvate dehydrogenase (acetyl-transferring) E1 component su...
| 1938 | 0.0e+00 |
| WP_189841467.1 | pyruvate dehydrogenase (acetyl-transferring) E1 component su...
| 1936 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2554 | Seems to have no N-terminal signal seq.
|