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IDSAVERM_4447 TypeCDS
From5434043 nt length204
To5433840 aa length67
GenecspD4 pI4.54
Definitionputative cold shock protein M.W (Da)7178
NotePF00313: 'Cold-shock' DNA-binding domain AseI frg.H
SignalP v.4.0Non-secretory protein | plot Categoryadaptation to atypical conditions


Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO3748 f40 cold shock protein1321.0e-43
sgrSGR_5495 putative cold shock protein1344.0e-44
samSAM23877_3897 cold shock protein-like protein1321.0e-43

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

CSD1'Cold-shock' DNA-binding domain3-65105.96.6e-31

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_064071132.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3423.9e-41
WP_007383480.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3406.3e-41
GHD64728.1 cold-shock protein [Streptomyces goshikiensis] 3406.5e-41
WP_030228921.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3406.6e-41
WP_189825182.1 cold-shock protein [Streptomyces finlayi] >dbj 3406.7e-41
WP_033176054.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3407.5e-41
WP_073800008.1 MULTISPECIES: cold-shock protein [unclassified Streptomyces]... 3391.2e-40
WP_053661143.1 MULTISPECIES: cold-shock protein [Streptomyces] >gb 3381.2e-40
WP_007268031.1 MULTISPECIES: cold-shock protein [unclassified Streptomyces]... 3381.3e-40
GDY53843.1 cold-shock protein [Streptomyces violaceusniger] 3391.3e-40

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.2929 Seems to have no N-terminal signal seq.