| ID | SAVERM_4556
| Type | CDS
|
| From | 5564945
| nt length | 342
|
| To | 5565286
| aa length | 113
|
| Gene |
| pI | 3.99
|
| Definition | hypothetical protein
| M.W (Da) | 11538
|
| Note | PF02575: Uncharacterised BCR, YbaB family COG0718
| AseI frg. | L
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3619 hypothetical protein | 182 | 7.0e-62
|
| sgr | SGR_3378 conserved hypothetical protein | 174 | 6.0e-59
|
| sam | SAM23877_4000 Nucleoid-associated protein | 185 | 6.0e-63
|
| scab | SCAB41791 hypothetical protein | 172 | 7.0e-58
|
| sace | SACE_0254 hypothetical protein | 132 | 4.0e-42
|
| nfar | nfa2940 hypothetical protein | 129 | 6.0e-32
|
| mtub | gi|15610852 hypothetical protein Rv3716c [Mycobacterium tuberculosis H37Rv] | 110 | 2.3e-26
|
| cglu | gi|19551494 COG0718:Uncharacterized BCR [Corynebacterium glutamicum] | 106 | 2.4e-25
|
| bsub | BG10084 yaaK; similar to unknown proteins | 90 | 2.2e-20
|
| ecoli | gi|16128455 hypothetical protein b0471 [Escherichia coli K12] | 74 | 1.8e-15
|
| paer | PA1533 [gene=PA1533] [prot=conserved hypothetical protein] [comment=PA1533] | 68 | 1.7e-13
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| YbaB_DNA_bd | 1 | YbaB/EbfC DNA-binding family | 15-103 | 108.5 | 1.3e-31
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| OKJ32238.1 | nucleoid-associated protein [Streptomyces sp. CB01580]
| 238 | 3.7e-24 |
| WP_073788244.1 | YbaB/EbfC family nucleoid-associated protein [Streptomyces s...
| 238 | 4.9e-24 |
| WP_030726450.1 | YbaB/EbfC family nucleoid-associated protein [Streptomyces s...
| 238 | 5.0e-24 |
| RPF41396.1 | hypothetical protein EDD96_5195 [Streptomyces sp. Ag109_G2-6]
| 237 | 6.4e-24 |
| WP_216678095.1 | YbaB/EbfC family nucleoid-associated protein [Streptomyces s...
| 237 | 6.5e-24 |
| WP_093899343.1 | YbaB/EbfC family nucleoid-associated protein [Streptomyces s...
| 237 | 7.0e-24 |
| OKI73148.1 | nucleoid-associated protein [Streptomyces sp. TSRI0445] >gb
| 237 | 7.2e-24 |
| WP_076044258.1 | MULTISPECIES: YbaB/EbfC family nucleoid-associated protein [...
| 237 | 7.3e-24 |
| WP_078903734.1 | YbaB/EbfC family nucleoid-associated protein [Streptomyces x...
| 237 | 7.7e-24 |
| WP_138960978.1 | YbaB/EbfC family nucleoid-associated protein [Streptomyces s...
| 237 | 8.3e-24 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2992 | Seems to have no N-terminal signal seq.
|