| ID | SAVERM_4566
| Type | CDS
|
| From | 5577484
| nt length | 648
|
| To | 5576837
| aa length | 215
|
| Gene |
| pI | 9.28
|
| Definition | hypothetical protein
| M.W (Da) | 24242
|
| Note | PF01638: Transcriptional regulator
| AseI frg. | L
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO2853 conserved hypothetical protein | 114 | 2.0e-32
|
| sgr | SGR_6965 putative transcriptional regulator | 94 | 3.0e-25
|
| sam | SAM23877_0370 hypothetical protein | 223 | 2.0e-75
|
| scab | SCAB3541 hypothetical protein | 100 | 1.0e-27
|
| sace | SACE_3001 hypothetical protein | 268 | 3.0e-93
|
| nfar | nfa16190 hypothetical protein | 135 | 2.1e-33
|
| mtub | gi|15610232 HYPOTHETICAL TRANSCRIPTIONAL REGULATORY PROTEIN [Mycobacterium tuberculosis H37Rv] | 145 | 2.0e-36
|
| paer | PA0116 [gene=PA0116] [prot=hypothetical protein] [comment=PA0116] | 159 | 1.8e-40
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| HxlR | 1 | HxlR-like helix-turn-helix | 69-155 | 77.0 | 7.1e-22
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_189188709.1 | helix-turn-helix transcriptional regulator [Streptomyces alb...
| 702 | 5.1e-92 |
| SFN29706.1 | transcriptional regulator, HxlR family [Streptomyces sp. cf124]
| 698 | 2.2e-91 |
| WP_060887670.1 | helix-turn-helix transcriptional regulator [Streptomyces can...
| 696 | 3.8e-91 |
| WP_234360393.1 | helix-turn-helix transcriptional regulator [Streptomyces sp....
| 695 | 6.3e-91 |
|
| 693 | 9.9e-91 |
| WP_223735165.1 | helix-turn-helix transcriptional regulator [Streptomyces pur...
| 691 | 2.2e-90 |
| WP_069768944.1 | helix-turn-helix transcriptional regulator [Streptomyces sp....
| 690 | 2.3e-90 |
| WP_030039814.1 | helix-turn-helix transcriptional regulator [Streptomyces res...
| 690 | 2.3e-90 |
| WP_164432060.1 | helix-turn-helix transcriptional regulator [Streptomyces sp....
| 690 | 2.5e-90 |
| WP_031059268.1 | helix-turn-helix transcriptional regulator [Streptomyces och...
| 689 | 3.8e-90 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2725 | Seems to have no N-terminal signal seq.
|