| ID | SAVERM_4588
| Type | CDS
|
| From | 5602812
| nt length | 471
|
| To | 5603282
| aa length | 156
|
| Gene |
| pI | 4.43
|
| Definition | hypothetical protein
| M.W (Da) | 15770
|
| Note | PF01042: Endoribonuclease L-PSP
| AseI frg. | L
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3575 hypothetical protein | 265 | 2.0e-93
|
| sgr | SGR_3336 conserved hypothetical protein | 273 | 1.0e-96
|
| sam | SAM23877_4087 Translation initiation inhibitor | 239 | 6.0e-83
|
| scab | SCAB41351 hypothetical protein | 273 | 1.0e-96
|
| sace | SACE_2508 translation initiation inhibitor | 166 | 3.0e-54
|
| nfar | nfa3440 hypothetical protein | 177 | 3.7e-46
|
| mtub | gi|15610814 hypothetical protein Rv3678c [Mycobacterium tuberculosis H37Rv] | 191 | 2.0e-50
|
| cglu | gi|19551532 COG0251:Putative translation initiation inhibitor [Corynebacterium glutamicum] | 188 | 8.9e-50
|
| paer | PA0814 [gene=PA0814] [prot=conserved hypothetical protein] [comment=PA0814] | 119 | 1.3e-28
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| YjgF_endoribonc | 1 | YjgF/chorismate_mutase-like, putative endoribonuclease | 6-152 | 113.2 | 1e-32
|
| Ribonuc_L-PSP | 1 | Endoribonuclease L-PSP | 22-152 | 79.2 | 2.2e-22
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| outside | 0.3000 | Seems to have a cleavable N-term signal seq.
|