| ID | SAVERM_4609
| Type | CDS
|
| From | 5627482
| nt length | 306
|
| To | 5627787
| aa length | 101
|
| Gene |
| pI | 11.85
|
| Definition | putative membrane protein
| M.W (Da) | 10079
|
| Note |
| AseI frg. | L
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | miscellaneous
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3554 putative integral membrane protein | 121 | 4.0e-36
|
| sgr | SGR_3318 hypothetical protein | 97 | 1.0e-26
|
| sam | SAM23877_4112 Hypothetical protein | 115 | 4.0e-34
|
| scab | SCAB41141 putative membrane protein | 115 | 1.0e-33
|
| nfar | nfa3610 hypothetical protein | 90 | 2.4e-20
|
| mtub | gi|15610793 POSSIBLE CONSERVED ALANINE RICH MEMBRANE PROTEIN [Mycobacterium tuberculosis H37Rv] | 83 | 3.0e-18
|
| cglu | gi|19551553 conserved hypothetical protein, predicted by GeneMark hmm [Corynebacterium glutamicum] | 55 | 3.5e-10
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| T2SSF | 1 | Type II secretion system (T2SS), protein F | 1-84 | 31.6 | 1.2e-07
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_164417029.1 | type II secretion system F family protein, partial [Streptom...
| 212 | 4.2e-20 |
| WP_198539534.1 | type II secretion system F family protein, partial [Streptom...
| 214 | 7.2e-20 |
| NEC84986.1 | hypothetical protein [Streptomyces sp. SID12501]
| 212 | 8.6e-19 |
| WP_203729329.1 | type II secretion system F family protein [Streptomyces sp. ...
| 212 | 1.2e-18 |
| SED86948.1 | Type II secretion system (T2SS), protein F [Streptomyces sp. 321...
| 205 | 4.2e-18 |
| WP_055492043.1 | type II secretion system F family protein [Streptomyces sp. ...
| 209 | 4.3e-18 |
|
| 206 | 7.3e-18 |
| WP_236584578.1 | type II secretion system F family protein [Streptomyces sp. ...
| 206 | 7.8e-18 |
|
| 206 | 8.2e-18 |
| WP_093627593.1 | type II secretion system F family protein [Streptomyces sp. ...
| 205 | 9.4e-18 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.4376 | Seems to have no N-terminal signal seq.
|