| ID | SAVERM_4613
| Type | CDS
|
| From | 5631517
| nt length | 2508
|
| To | 5629010
| aa length | 835
|
| Gene |
| pI | 6.46
|
| Definition | putative ATP-dependent RNA helicase
| M.W (Da) | 89739
|
| Note | PF00270: DEAD/DEAH box helicase
| AseI frg. | L
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | RNA modification
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3550 putative helicase | 1477 | 0.0e+00
|
| sgr | SGR_3308 putative ATP-dependent RNA helicase | 1344 | 0.0e+00
|
| sam | SAM23877_4116 putative helicase | 1305 | 0.0e+00
|
| scab | SCAB40871 putative ATP-dependent RNA helicase | 1511 | 0.0e+00
|
| sace | SACE_0373 DEAD/DEAH box helicase-like | 835 | 0.0e+00
|
| nfar | nfa3650 ATP-dependent RNA helicase | 827 | 0.0e+00
|
| mtub | gi|15610785 PROBABLE HELICASE [Mycobacterium tuberculosis H37Rv] | 744 | 0.0e+00
|
| cglu | gi|19551557 COG1205:Distinct helicase family with a unique C-terminal domain including a metal-binding cysteine cluster [Corynebacterium glutamicum] | 711 | 0.0e+00
|
| bsub | BG11451 yprA; similar to ATP-dependent helicase | 478 | 4.7e-136
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DEAD | 1 | DEAD/DEAH box helicase | 102-277 | 91.8 | 3.8e-26
|
| DUF1998 | 1 | Domain of unknown function (DUF1998) | 707-786 | 71.8 | 5.6e-20
|
| Helicase_C | 1 | Helicase conserved C-terminal domain | 336-446 | 47.6 | 1.7e-12
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.0684 | Seems to have no N-terminal signal seq.
|