| ID | SAVERM_4623
| Type | CDS
|
| From | 5647265
| nt length | 1206
|
| To | 5648470
| aa length | 401
|
| Gene | holB
| pI | 6.1
|
| Definition | putative DNA polymerase III delta prime subunit
| M.W (Da) | 42777
|
| Note | PF00004: ATPase family associated with various cellular activities (AAA)
| AseI frg. | L
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA replication
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3541 putative DNA polymerase | 630 | 0.0e+00
|
| sgr | SGR_3299 putative DNA polymerase III | 573 | 0.0e+00
|
| sam | SAM23877_4125 DNA polymerase III subunit delta | 625 | 0.0e+00
|
| scab | SCAB40751 putative DNA polymerase III delta prime subunit | 677 | 0.0e+00
|
| sace | SACE_0379 DNA polymerase III, delta' subunit | 335 | 1.0e-113
|
| nfar | nfa3680 DNA polymerase III delta' subunit | 343 | 2.0e-95
|
| mtub | gi|15610780 DNA polymerase III subunit delta [Mycobacterium tuberculosis H37Rv] | 325 | 2.5e-90
|
| cglu | gi|19551562 COG0470:ATPase involved in DNA replication [Corynebacterium glutamicum] | 270 | 8.8e-74
|
| paer | PA2961 [gene=holB] [prot=DNA polymerase III, delta prime subunit] [comment=PA2961] | 93 | 2.9e-20
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DNA_pol3_delta2 | 1 | DNA polymerase III, delta subunit | 40-186 | 113.9 | 5.7e-33
|
| AAA | 1 | ATPase family associated with various cellular activities (AAA) | 48-182 | 25.6 | 1.2e-05
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_062723517.1 | DNA polymerase III subunit delta' [Streptomyces caeruleatus]...
| 1465 | 0.0e+00 |
| WP_186283850.1 | DNA polymerase III subunit delta' [Streptomyces sp. PSKA01] ...
| 1464 | 0.0e+00 |
| WP_220647260.1 | DNA polymerase III subunit delta' [Streptomyces sp. MG28] >g...
| 1463 | 0.0e+00 |
| WP_152170667.1 | DNA polymerase III subunit delta' [Streptomyces phaeolivaceu...
| 1463 | 0.0e+00 |
| WP_015658840.1 | DNA polymerase III subunit delta' [Streptomyces davaonensis]...
| 1460 | 0.0e+00 |
| WP_093908626.1 | DNA polymerase III subunit delta' [Streptomyces sp. cf386] >...
| 1460 | 0.0e+00 |
| WP_060906597.1 | DNA polymerase III subunit delta' [Streptomyces scabiei]
| 1459 | 0.0e+00 |
| NUR03544.1 | DNA polymerase III subunit delta' [Streptomyces sp.]
| 1459 | 0.0e+00 |
| NUO46991.1 | DNA polymerase III subunit delta' [Streptomyces sp.] >gb
| 1457 | 0.0e+00 |
| WP_030942459.1 | DNA polymerase III subunit delta' [Streptomyces sp. NRRL S-6...
| 1457 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2869 | Seems to have no N-terminal signal seq.
|