| ID | SAVERM_4642
| Type | CDS
|
| From | 5668749
| nt length | 222
|
| To | 5668528
| aa length | 73
|
| Gene | rpmB2
| pI | 12.58
|
| Definition | putative ribosomal protein L28
| M.W (Da) | 8223
|
| Note | PF00830: Ribosomal L28 family
| AseI frg. | R
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3429 putative 50S ribosomal protein L28 | 135 | 2.0e-44
|
| sgr | SGR_545 putative 50S ribosomal protein L28 | 118 | 1.0e-37
|
| sam | SAM23877_4136 50S ribosomal subunit protein L28 | 131 | 5.0e-43
|
| scab | SCAB40011 putative ribosomal protein L28 | 137 | 3.0e-45
|
| sace | SACE_0754 50S ribosomal protein L28 | 97 | 1.0e-29
|
| nfar | nfa49750 rpmB ribosomal protein L28 | 100 | 2.6e-23
|
| mtub | gi|15609195 50S ribosomal protein L28 [Mycobacterium tuberculosis H37Rv] | 96 | 2.7e-22
|
| cglu | gi|19552095 COG0227:Ribosomal protein L28 [Corynebacterium glutamicum] | 91 | 6.4e-21
|
| ecoli | gi|16131508 50S ribosomal protein L28 [Escherichia coli K12] | 75 | 8.3e-16
|
| paer | PA5316 [gene=rpmB] [prot=50S ribosomal protein L28] [comment=PA5316] | 83 | 2.0e-18
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L28 | 1 | Ribosomal L28 family | 2-55 | 76.1 | 1.7e-21
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_184765079.1 | 50S ribosomal protein L28 [Streptomyces albaduncus] >lcl
| 293 | 1.7e-33 |
| WP_221492611.1 | 50S ribosomal protein L28 [Streptomyces albaduncus]
| 292 | 2.1e-33 |
| WP_059194016.1 | MULTISPECIES: 50S ribosomal protein L28 [Streptomyces] >gb
| 292 | 2.8e-33 |
| WP_189874774.1 | 50S ribosomal protein L28 [Streptomyces viridiviolaceus] >db...
| 290 | 4.9e-33 |
| GGV83251.1 | 50S ribosomal protein L28-2 [Streptomyces griseoloalbus]
| 290 | 6.5e-33 |
| WP_194042599.1 | 50S ribosomal protein L28 [Streptomyces ferrugineus] >gb
| 289 | 8.1e-33 |
| WP_030043313.1 | MULTISPECIES: 50S ribosomal protein L28 [Streptomyces] >gb
| 288 | 1.0e-32 |
| WP_055492023.1 | 50S ribosomal protein L28 [Streptomyces sp. TP-A0356]
| 288 | 1.1e-32 |
| KOU68053.1 | 50S ribosomal protein L28 [Streptomyces sp. MMG1533]
| 287 | 1.2e-32 |
| WP_200304482.1 | 50S ribosomal protein L28 [Streptomyces adelaidensis]
| 288 | 1.2e-32 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.4780 | Seems to have no N-terminal signal seq.
|