| ID | SAVERM_4655
| Type | CDS
|
| From | 5679713
| nt length | 1413
|
| To | 5678301
| aa length | 470
|
| Gene | gadB2
| pI | 5.04
|
| Definition | putative glutamate decarboxylase
| M.W (Da) | 52225
|
| Note | PF00282: Pyridoxal-dependent decarboxylase conserved domain
| AseI frg. | R
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of amino acids & related molecules
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3416 putative glutamate decarboxylase | 804 | 0.0e+00
|
| sgr | SGR_4077 putative glutamate decarboxylase | 782 | 0.0e+00
|
| sam | SAM23877_4149 Glutamate decarboxylase beta | 801 | 0.0e+00
|
| scab | SCAB39881 putative glutamate decarboxylase | 815 | 0.0e+00
|
| nfar | nfa35400 glutamate decarboxylase | 632 | 0.0e+00
|
| mtub | gi|15610568 PROBABLE GLUTAMATE DECARBOXYLASE GADB [Mycobacterium tuberculosis H37Rv] | 464 | 5.5e-132
|
| ecoli | gi|16131389 glutamate decarboxylase A, isozyme, PLP-dependent [Escherichia coli K12] | 409 | 2.1e-115
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Pyridoxal_deC | 1 | Pyridoxal-dependent decarboxylase conserved domain | 49-384 | 245.7 | 5.5e-73
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2596 | Seems to have no N-terminal signal seq.
|