| ID | SAVERM_4657
| Type | CDS
|
| From | 5681130
| nt length | 762
|
| To | 5681891
| aa length | 253
|
| Gene | tipA
| pI | 5.03
|
| Definition | putative MerR-family transcriptional regulator
| M.W (Da) | 28987
|
| Note | PF07739: TipAS antibiotic-recognition domain
| AseI frg. | R
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3413 transcriptional regulator | 365 | 5.0e-130
|
| sgr | SGR_2034 putative MerR-family transcriptional regulator | 205 | 1.0e-66
|
| sam | SAM23877_4150 HTH-type transcriptional activator TipA | 375 | 1.0e-133
|
| scab | SCAB39861 putative MerR-family transcriptional regulator | 419 | 3.0e-151
|
| sace | SACE_7241 MerR-family transcriptional regulator | 308 | 2.0e-107
|
| nfar | nfa29380 transcriptional regulator | 152 | 2.7e-38
|
| cglu | gi|19553807 COG0789:Predicted transcriptional regulators [Corynebacterium glutamicum] | 149 | 9.6e-38
|
| bsub | BG12482 mta, ywnD; transcriptional activator of multidrug-efflux transporter genes | 177 | 5.4e-46
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| TipAS | 1 | TipAS antibiotic-recognition domain | 132-247 | 125.0 | 2e-36
|
| MerR_1 | 1 | MerR HTH family regulatory protein | 3-70 | 61.9 | 4.2e-17
|
| MerR | 1 | MerR family regulatory protein | 4-41 | 50.4 | 1.3e-13
|
| MerR-DNA-bind | 1 | MerR, DNA binding | 46-102 | 44.9 | 1.2e-11
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_237529502.1 | MerR family transcriptional regulator [Streptomyces sp. SID5...
| 1229 | 1.0e-170 |
| WP_168529308.1 | MerR family transcriptional regulator [Streptomyces sp. RPA4...
| 1211 | 1.1e-167 |
| WP_153289313.1 | MerR family transcriptional regulator [Streptomyces fagopyri...
| 1201 | 3.5e-166 |
| WP_059133640.1 | MULTISPECIES: MerR family transcriptional regulator [unclass...
| 1194 | 4.3e-165 |
| WP_148012318.1 | MerR family transcriptional regulator [Streptomyces sp. me10...
| 1191 | 1.1e-164 |
| WP_105970880.1 | MerR family transcriptional regulator [Streptomyces geranii]
| 1188 | 3.6e-164 |
| WP_006375913.1 | MULTISPECIES: MerR family transcriptional regulator [Strepto...
| 1184 | 1.6e-163 |
| NEA65537.1 | MerR family transcriptional regulator [Streptomyces sp. SID12488]
| 1180 | 7.3e-163 |
| WP_130438438.1 | MerR family transcriptional regulator [Streptomyces sp. BK23...
| 1179 | 9.3e-163 |
| WP_069764630.1 | MerR family transcriptional regulator [Streptomyces sp. LUP4...
| 1179 | 1.1e-162 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.0463 | Seems to have no N-terminal signal seq.
|