| ID | SAVERM_4701
| Type | CDS
|
| From | 5729892
| nt length | 576
|
| To | 5729317
| aa length | 191
|
| Gene |
| pI | 5.01
|
| Definition | putative TetR-family transcriptional regulator
| M.W (Da) | 21868
|
| Note | PF00440: Bacterial regulatory proteins, tetR family
| AseI frg. | R
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | regulation
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3367 putative tetR-family regulator | 315 | 6.0e-112
|
| sam | SAM23877_4197 TetR family transcriptional regulator | 309 | 1.0e-109
|
| scab | SCAB39461 putative TetR-family transcriptional regulator | 322 | 2.0e-114
|
| sace | SACE_6185 transcriptional regulator, TetR family | 74 | 1.0e-17
|
| nfar | nfa2610 transcriptional regulator | 68 | 4.5e-13
|
| cglu | gi|19554245 COG1309:Transcriptional regulator [Corynebacterium glutamicum] | 63 | 7.9e-12
|
| ecoli | gi|16128448 acrAB operon repressor [Escherichia coli K12] | 61 | 4.2e-11
|
| paer | PA0367 [gene=PA0367] [prot=probable transcriptional regulator] [comment=PA0367] | 56 | 1.8e-09
|
*coel, Streptomyces coelicolor A3(2); sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| TetR_N | 1 | Bacterial regulatory proteins, tetR family | 18-61 | 66.6 | 1.1e-18
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_099506220.1 | MULTISPECIES: TetR/AcrR family transcriptional regulator [St...
| 950 | 6.9e-130 |
| WP_189188518.1 | TetR/AcrR family transcriptional regulator [Streptomyces alb...
| 945 | 4.3e-129 |
| WP_164372948.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 935 | 1.3e-127 |
| WP_103552416.1 | TetR/AcrR family transcriptional regulator [Streptomyces pop...
| 931 | 6.4e-127 |
| WP_081218637.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 930 | 7.6e-127 |
|
| 928 | 2.5e-126 |
| WP_225860992.1 | TetR/AcrR family transcriptional regulator [Streptomyces tri...
| 927 | 2.5e-126 |
| WP_051901168.1 | TetR/AcrR family transcriptional regulator [Streptomyces aur...
| 912 | 7.6e-124 |
| WP_071367299.1 | TetR/AcrR family transcriptional regulator [Streptomyces col...
| 895 | 1.9e-121 |
| WP_200397486.1 | TetR/AcrR family transcriptional regulator [Streptomyces sp....
| 890 | 1.2e-120 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2572 | Seems to have no N-terminal signal seq.
|