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IDSAVERM_4706 TypeCDS
From5735285 nt length540
To5734746 aa length179
Genesig41 pI5.75
Definitionputative RNA polymerase ECF-subfamily sigma factor M.W (Da)20617
Notesimilar to SCO3356:sigE, PF04545: Sigma-70, region 4 AseI frg.R
SignalP v.4.0Non-secretory protein | plot CategoryRNA initiation

Orthologs (if any)

Bacteria*Reciprocally best hit toScoreE-value
coelSCO3356 ECF sigma factor3002.0e-106
sgrSGR_4125 putative RNA polymerase ECF-subfamily sigma factor3062.0e-108
samSAM23877_4203 RNA polymerase sigma-E factor3032.0e-107
scabSCAB39411 putative RNA polymerase sigma factor3302.0e-118

*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22;

Pfam search result



ModelNo.DescriptionPosition (aa)ScoreE-value

Sigma70_r4_21Sigma-70, region 4104-15560.77.4e-17

Sigma70_r41Sigma-70, region 4109-15751.83.9e-14

Sigma70_r21Sigma-70 region 216-7832.45.5e-08

Sigma70_ECF1ECF sigma factor94-16023.15.2e-05

BLAST search result (top 10 hits)

ID DescriptionScoreE-value
WP_189731592.1 SigE family RNA polymerase sigma factor [Streptomyces aureov... 7594.9e-101
WP_165270465.1 SigE family RNA polymerase sigma factor [Streptomyces scabic... 7587.0e-101
EPH40922.1 putative RNA polymerase sigma-E factor [Streptomyces aurantiacus ... 7588.3e-101
WP_030567966.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7569.7e-101
QIY97482.1 SigE family RNA polymerase sigma factor [Streptomyces sp. S1D4-11... 7561.0e-100
WP_164322172.1 MULTISPECIES: SigE family RNA polymerase sigma factor [Strep... 7561.0e-100
WP_138961132.1 MULTISPECIES: SigE family RNA polymerase sigma factor [uncla... 7551.2e-100
WP_189188513.1 SigE family RNA polymerase sigma factor [Streptomyces albifl... 7551.7e-100
WP_107022359.1 SigE family RNA polymerase sigma factor [Streptomyces diosco... 7551.8e-100
WP_143640460.1 SigE family RNA polymerase sigma factor [Streptomyces sp. IB... 7542.5e-100

PSORT result

LocalizationCertaintyPSORT said
cytoplasm0.4278 Seems to have no N-terminal signal seq.