| ID | SAVERM_4707
| Type | CDS
|
| From | 5736562
| nt length | 942
|
| To | 5735621
| aa length | 313
|
| Gene | mutY
| pI | 9.19
|
| Definition | putative A/G-specific adenine glycosylase
| M.W (Da) | 33986
|
| Note | G/C -> T/A transversion, PF00730: HhH-GPD superfamily base excision DNA repair protein
| AseI frg. | R
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA modification & repair
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3355 putative adenine glycosylase | 528 | 0.0e+00
|
| sgr | SGR_4126 putative adenine glycosylase | 501 | 0.0e+00
|
| sam | SAM23877_4204 A/G-specific adenine glycosylase | 517 | 0.0e+00
|
| scab | SCAB39401 putative A/G-specific adenine glycosylase | 529 | 0.0e+00
|
| sace | SACE_0432 A/G-specific adenine glycosylase | 296 | 7.0e-101
|
| nfar | nfa4290 mutY A/G-specific adenine glycosylase | 276 | 1.3e-75
|
| mtub | gi|15610725 PROBABLE ADENINE GLYCOSYLASE MUTY [Mycobacterium tuberculosis H37Rv] | 281 | 3.1e-77
|
| cglu | gi|19553867 COG1194:A/G-specific DNA glycosylase [Corynebacterium glutamicum] | 272 | 1.7e-74
|
| bsub | BG12891 yfhQ; similar to A/G-specific adenine glycosylase [EC:3.2.2.-] | 118 | 5.2e-28
|
| ecoli | gi|16130862 adenine DNA glycosylase [Escherichia coli K12] | 136 | 1.6e-33
|
| paer | PA5147 [gene=mutY] [prot=A / G specific adenine glycosylase] [comment=PA5147] | 145 | 3.6e-36
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| HhH-GPD | 1 | HhH-GPD superfamily base excision DNA repair protein | 56-170 | 40.4 | 3e-10
|
| HHH | 1 | Helix-hairpin-helix motif | 120-149 | 29.4 | 4.4e-07
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_097267298.1 | A/G-specific adenine glycosylase [Streptomyces sp. TLI_55] >...
| 1408 | 0.0e+00 |
| WP_028799034.1 | A/G-specific adenine glycosylase [Streptomyces sp. 142MFCol3...
| 1406 | 0.0e+00 |
|
| 1405 | 0.0e+00 |
| WP_187285879.1 | A/G-specific adenine glycosylase [Streptomyces sp. me109]
| 1404 | 0.0e+00 |
| WP_095935758.1 | A/G-specific adenine glycosylase [Streptomyces sp. Tue6028] ...
| 1404 | 0.0e+00 |
| WP_059193954.1 | A/G-specific adenine glycosylase [Streptomyces antibioticus]...
| 1404 | 0.0e+00 |
| QFZ74996.1 | A/G-specific adenine glycosylase [Streptomyces fagopyri]
| 1403 | 0.0e+00 |
| WP_194280863.1 | A/G-specific adenine glycosylase [Streptomyces fagopyri]
| 1402 | 0.0e+00 |
| WP_099506228.1 | MULTISPECIES: A/G-specific adenine glycosylase [Streptomyces...
| 1398 | 0.0e+00 |
| QIY63935.1 | A/G-specific adenine glycosylase [Streptomyces sp. RPA4-2]
| 1397 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3107 | Seems to have no N-terminal signal seq.
|