| ID | SAVERM_4723
| Type | CDS
|
| From | 5755753
| nt length | 792
|
| To | 5756544
| aa length | 263
|
| Gene |
| pI | 8.5
|
| Definition | putative ABC transporter permease protein
| M.W (Da) | 27922
|
| Note | PF01061: ABC-2 type transporter
| AseI frg. | R
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | transport / binding proteins & lipoproteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3338 putative integral membrane protein | 406 | 9.0e-146
|
| sgr | SGR_4140 putative ABC transporter permease protein | 363 | 1.0e-128
|
| sam | SAM23877_4222 putative integral membrane protein | 404 | 1.0e-144
|
| scab | SCAB39231 putative ABC transporter permease protein | 425 | 4.0e-153
|
| nfar | nfa19880 transporter | 244 | 5.6e-66
|
| mtub | gi|15608824 PROBABLE CONSERVED INTEGRAL MEMBRANE PROTEIN ABC TRANSPORTER [Mycobacterium tuberculosis H37Rv] | 199 | 1.2e-52
|
| cglu | gi|19552671 COG0842:ABC-type multidrug transport system, permease component [Corynebacterium glutamicum] | 177 | 3.5e-46
|
| paer | PA5230 [gene=PA5230] [prot=probable permease of ABC transporter] [comment=PA5230] | 61 | 9.1e-11
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| ABC2_membrane | 1 | ABC-2 type transporter | 28-224 | 124.2 | 4.4e-36
|
| ABC2_membrane_3 | 1 | ABC-2 family transporter protein | 67-255 | 74.9 | 5.8e-21
|
| ABC2_membrane_2 | 1 | ABC-2 family transporter protein | 70-257 | 41.5 | 8.6e-11
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.4185 | Seems to have no N-terminal signal seq.
|