| ID | SAVERM_4731
| Type | CDS
|
| From | 5769605
| nt length | 246
|
| To | 5769850
| aa length | 81
|
| Gene |
| pI | 8.76
|
| Definition | hypothetical protein
| M.W (Da) | 9050
|
| Note |
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3328 hypothetical protein | 140 | 2.0e-46
|
| sgr | SGR_4146 conserved hypothetical protein | 144 | 9.0e-48
|
| sam | SAM23877_4231 DNA-binding protein | 138 | 1.0e-45
|
| scab | SCAB39161 hypothetical protein | 163 | 3.0e-55
|
| sace | SACE_6958 excisionase/Xis, DNA-binding | 84 | 3.0e-24
|
| nfar | nfa51760 hypothetical protein | 86 | 3.8e-19
|
| mtub | gi|57116743 hypothetical protein Rv0500A [Mycobacterium tuberculosis H37Rv] | 80 | 2.5e-17
|
| cglu | gi|19551657 hypothetical protein, predicted by GeneMark hmm [Corynebacterium glutamicum] | 83 | 1.3e-18
|
| bsub | BG14093 yvgK, yvsE; similar to molybdenum-binding protein | 54 | 1.1e-09
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| HTH_17 | 1 | Helix-turn-helix domain | 25-73 | 51.9 | 5.7e-14
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| ALV51507.1 | transcriptional regulator [Streptomyces sp. 4F] >gb
| 410 | 3.4e-51 |
| AKN68446.1 | transcriptional regulator [Streptomyces sp. PBH53] >gb
| 410 | 3.4e-51 |
| QER84825.1 | helix-turn-helix domain-containing protein [Streptomyces tendae]
| 410 | 4.3e-51 |
| AIV34961.1 | transcriptional regulator [Streptomyces sp. CCM_MD2014] >gb
| 409 | 5.0e-51 |
| AXI87990.1 | helix-turn-helix domain-containing protein [Streptomyces sp. ETH9...
| 409 | 6.5e-51 |
| KFG02535.1 | transcriptional regulator [Streptomyces scabiei] >gb
| 409 | 6.6e-51 |
| OIJ63226.1 | transcriptional regulator [Streptomyces mangrovisoli]
| 408 | 7.6e-51 |
| ANB07757.1 | transcriptional regulator [Streptomyces ambofaciens] >gb
| 408 | 7.6e-51 |
| NDK28518.1 | helix-turn-helix domain-containing protein [Streptomyces sp. TR13...
| 408 | 7.9e-51 |
| KUJ35272.1 | transcriptional regulator [Streptomyces sp. NRRL F-5122] >lcl
| 408 | 8.4e-51 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1251 | Seems to have no N-terminal signal seq.
|