| ID | SAVERM_4740
| Type | CDS
|
| From | 5779514
| nt length | 975
|
| To | 5780488
| aa length | 324
|
| Gene | hemC1
| pI | 4.66
|
| Definition | putative porphobilinogen deaminase
| M.W (Da) | 33772
|
| Note | PF01379: Porphobilinogen deaminase, dipyromethane cofactor binding domain
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | metabolism of coenzymes & prosthetic groups
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3318 putative porphobilinogen deaminase | 538 | 0.0e+00
|
| sgr | SGR_4156 putative porphobilinogen deaminase | 494 | 3.0e-178
|
| sam | SAM23877_4241 Porphobilinogen deaminase 1 | 524 | 0.0e+00
|
| scab | SCAB39071 putative porphobilinogen deaminase | 511 | 0.0e+00
|
| sace | SACE_6945 porphobilinogen deaminase | 270 | 4.0e-90
|
| nfar | nfa51690 hemC porphobilinogen deaminase | 291 | 6.8e-80
|
| mtub | gi|15607651 porphobilinogen deaminase [Mycobacterium tuberculosis H37Rv] | 275 | 3.9e-75
|
| cglu | gi|19551663 COG0181:Porphobilinogen deaminase [Corynebacterium glutamicum] | 230 | 7.8e-62
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Porphobil_deam | 1 | Porphobilinogen deaminase, dipyromethane cofactor binding domain | 6-219 | 218.8 | 4.9e-65
|
| Porphobil_deamC | 1 | Porphobilinogen deaminase, C-terminal domain | 234-311 | 62.1 | 4.4e-17
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2461 | Seems to have no N-terminal signal seq.
|