| ID | SAVERM_4753
| Type | CDS
|
| From | 5796203
| nt length | 1194
|
| To | 5797396
| aa length | 397
|
| Gene |
| pI | 8.35
|
| Definition | hypothetical protein
| M.W (Da) | 43592
|
| Note | PF01139: Uncharacterized protein family UPF0027
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO3299 hypothetical protein | 738 | 0.0e+00
|
| sgr | SGR_4185 conserved hypothetical protein | 736 | 0.0e+00
|
| sam | SAM23877_4256 RNA-splicing ligase RtcB | 746 | 0.0e+00
|
| scab | SCAB38881 hypothetical protein | 716 | 0.0e+00
|
| sace | SACE_3596 hypothetical protein | 540 | 0.0e+00
|
| nfar | nfa13690 hypothetical protein | 509 | 1.6e-145
|
| mtub | gi|57117009 hypothetical protein Rv2631 [Mycobacterium tuberculosis H37Rv] | 145 | 3.5e-36
|
| cglu | gi|19554195 COG1690:Uncharacterized ACR [Corynebacterium glutamicum] | 301 | 3.5e-83
|
| ecoli | gi|16131295 hypothetical protein b3421 [Escherichia coli K12] | 358 | 4.5e-100
|
| paer | PA4583 [gene=PA4583] [prot=conserved hypothetical protein] [comment=PA4583] | 364 | 8.6e-102
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| RtcB | 1 | tRNA-splicing ligase RtcB | 29-397 | 433.3 | 1e-129
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1235 | Seems to have no N-terminal signal seq.
|