| ID | SAVERM_4799
| Type | CDS
|
| From | 5839375
| nt length | 783
|
| To | 5840157
| aa length | 260
|
| Gene | ccsA
| pI | 9.14
|
| Definition | putative cytochrome C biogenesis membrane protein
| M.W (Da) | 27418
|
| Note | PF02683: Cytochrome C biogenesis protein transmembrane region
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | membrane bioenergetics
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4473 putative cytochrome biogenesis related protein | 421 | 2.0e-151
|
| sgr | SGR_4197 putative cytochrome C biogenesis membrane protein | 387 | 2.0e-138
|
| sam | SAM23877_4291 Cytochrome C biogenesis membrane protein | 401 | 8.0e-144
|
| scab | SCAB38651 putative cytochrome C biogenesis membrane protein | 403 | 1.0e-144
|
| sace | SACE_6932 cytochrome c-type biogenesis protein | 177 | 1.0e-55
|
| nfar | nfa51570 cytochrome c biogenesis membrane protein | 202 | 3.1e-53
|
| mtub | gi|57116750 POSSIBLE CYTOCHROME C-TYPE BIOGENESIS PROTEIN CCDA [Mycobacterium tuberculosis H37Rv] | 204 | 4.8e-54
|
| cglu | gi|19551685 COG0785:Cytochrome c biogenesis protein [Corynebacterium glutamicum] | 196 | 7.1e-52
|
| bsub | BG11240 ccdA; cytochrome C-type biogenesis protein | 127 | 6.6e-31
|
| ecoli | gi|16131961 thiol:disulfide interchange protein precursor [Escherichia coli K12] | 43 | 1.9e-05
|
| paer | PA2478 [gene=PA2478] [prot=probable thiol:disulfide interchange protein] [comment=PA2478] | 52 | 4.2e-08
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| DsbD | 1 | Cytochrome C biogenesis protein transmembrane region | 33-239 | 169.0 | 1.2e-49
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_202498314.1 | cytochrome c biogenesis protein CcdA [Streptomyces sp. SID54...
| 1138 | 1.2e-156 |
| PBC97060.1 | cytochrome c biogenesis protein CcdA [Streptomyces sp. Ag82_O1-15...
| 1114 | 1.2e-152 |
| WP_097289128.1 | cytochrome C biogenesis protein ResC [Streptomyces sp. OK228...
| 1110 | 4.5e-152 |
| WP_143602544.1 | MULTISPECIES: cytochrome c biogenesis protein CcdA [unclassi...
| 1109 | 8.0e-152 |
| WP_075028622.1 | MULTISPECIES: cytochrome C biogenesis protein ResC [Streptom...
| 1109 | 8.2e-152 |
| WP_054232113.1 | cytochrome C biogenesis protein CcdA [Streptomyces sp. WAC00...
| 1107 | 1.3e-151 |
| WP_096239994.1 | cytochrome C biogenesis protein ResC [Streptomyces olivochro...
| 1106 | 1.8e-151 |
| WP_168494436.1 | MULTISPECIES: cytochrome c biogenesis protein CcdA [Streptom...
| 1104 | 4.7e-151 |
| WP_217568243.1 | cytochrome c biogenesis protein CcdA [Streptomyces sp. GbtcB...
| 1102 | 7.1e-151 |
| KUN46751.1 | cytochrome C biogenesis protein ResC [Streptomyces olivochromogen...
| 1100 | 1.5e-150 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.4270 | Seems to have no N-terminal signal seq.
|