| ID | SAVERM_4838
| Type | CDS
|
| From | 5880778
| nt length | 555
|
| To | 5881332
| aa length | 184
|
| Gene | nuoB1
| pI | 7.93
|
| Definition | putative NADH dehydrogenase I chain B (complex I)
| M.W (Da) | 19996
|
| Note | PF01058: NADH ubiquinone oxidoreductase, 20 Kd subunit
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | membrane bioenergetics
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4563 nuoB NADH dehydrogenase subunit | 377 | 1.0e-136
|
| sgr | SGR_2983 putative NADH dehydrogenase chain B | 347 | 5.0e-125
|
| sam | SAM23877_4384 NADH-quinone oxidoreductase subunit B 1 | 377 | 6.0e-137
|
| scab | SCAB38081 putative NADH dehydrogenase I chain B (complex I) | 377 | 8.0e-137
|
| sace | SACE_6901 NADH dehydrogenase I chain B | 271 | 3.0e-94
|
| nfar | nfa26660 nuoB NADH dehydrogenase I chain B | 310 | 3.7e-86
|
| mtub | gi|15610282 NADH dehydrogenase beta subunit [Mycobacterium tuberculosis H37Rv] | 297 | 3.3e-82
|
| ecoli | gi|16130222 NADH dehydrogenase beta subunit [Escherichia coli K12] | 176 | 6.5e-46
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Oxidored_q6 | 1 | NADH ubiquinone oxidoreductase, 20 Kd subunit | 37-146 | 86.9 | 8.8e-25
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_030758424.1 | MULTISPECIES: NADH-quinone oxidoreductase subunit B [Strepto...
| 897 | 4.4e-122 |
| WP_055509252.1 | MULTISPECIES: NADH-quinone oxidoreductase subunit B [Strepto...
| 896 | 5.8e-122 |
| WP_067437764.1 | NADH-quinone oxidoreductase subunit B [Streptomyces lincolne...
| 896 | 5.9e-122 |
| WP_053743379.1 | MULTISPECIES: NADH-quinone oxidoreductase subunit B [Strepto...
| 896 | 5.9e-122 |
| WP_030610600.1 | MULTISPECIES: NADH-quinone oxidoreductase subunit B [Strepto...
| 896 | 6.4e-122 |
| WP_007383964.1 | MULTISPECIES: NADH-quinone oxidoreductase subunit B [Strepto...
| 895 | 8.8e-122 |
| WP_129307482.1 | NADH-quinone oxidoreductase subunit B [Streptomyces sp. L2]
| 895 | 8.8e-122 |
| WP_126885586.1 | NADH-quinone oxidoreductase subunit B [Streptomyces sp. WAC0...
| 895 | 8.8e-122 |
| WP_073753330.1 | MULTISPECIES: NADH-quinone oxidoreductase subunit B [unclass...
| 895 | 8.8e-122 |
| WP_043227783.1 | MULTISPECIES: NADH-quinone oxidoreductase subunit B [Strepto...
| 895 | 1.0e-121 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1299 | Seems to have no N-terminal signal seq.
|