| ID | SAVERM_4840
| Type | CDS
|
| From | 5882072
| nt length | 1332
|
| To | 5883403
| aa length | 443
|
| Gene | nuoD1
| pI | 5.45
|
| Definition | putative NADH dehydrogenase I chain D (complex I)
| M.W (Da) | 48617
|
| Note | PF00346: Respiratory-chain NADH dehydrogenase, 49 Kd subunit
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | membrane bioenergetics
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4565 nuoD NADH dehydrogenase subunit | 872 | 0.0e+00
|
| sgr | SGR_2981 putative NADH dehydrogenase chain D | 851 | 0.0e+00
|
| sam | SAM23877_4386 NADH-quinone oxidoreductase subunit D 1 | 871 | 0.0e+00
|
| scab | SCAB38061 putative NADH dehydrogenase I chain D (complex I) | 886 | 0.0e+00
|
| sace | SACE_6899 NADH dehydrogenase I chain D | 640 | 0.0e+00
|
| nfar | nfa26640 nuoD NADH dehydrogenase I chain D | 698 | 0.0e+00
|
| mtub | gi|15610284 NADH dehydrogenase delta subunit [Mycobacterium tuberculosis H37Rv] | 656 | 0.0e+00
|
| ecoli | gi|16130221 NADH dehydrogenase I chain C, D [Escherichia coli K12] | 293 | 2.0e-80
|
| paer | PA2639 [gene=nuoD] [prot=NADH dehydrogenase I chain C,D] [comment=PA2639] | 280 | 2.4e-76
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Complex1_49kDa | 1 | Respiratory-chain NADH dehydrogenase, 49 Kd subunit | 158-443 | 381.2 | 2e-114
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_006133123.1 | MULTISPECIES: NADH-quinone oxidoreductase subunit D [Strepto...
| 2144 | 0.0e+00 |
| WP_225657500.1 | NADH-quinone oxidoreductase subunit D [Streptomyces pseudogr...
| 2141 | 0.0e+00 |
| WP_189404503.1 | NADH-quinone oxidoreductase subunit D [Streptomyces gancidic...
| 2140 | 0.0e+00 |
| WP_020120592.1 | NADH-quinone oxidoreductase subunit D [Streptomyces canus]
| 2139 | 0.0e+00 |
| WP_215448456.1 | MULTISPECIES: NADH-quinone oxidoreductase subunit D [unclass...
| 2138 | 0.0e+00 |
| WP_234518286.1 | NADH-quinone oxidoreductase subunit D [Streptomyces glomerat...
| 2134 | 0.0e+00 |
| WP_013001515.1 | MULTISPECIES: NADH-quinone oxidoreductase subunit D [Strepto...
| 2134 | 0.0e+00 |
| WP_185012718.1 | NADH-quinone oxidoreductase subunit D [Streptomyces sp. AK01...
| 2133 | 0.0e+00 |
| WP_161166210.1 | NADH-quinone oxidoreductase subunit D [Streptomyces sp. SID5...
| 2131 | 0.0e+00 |
| WP_189591453.1 | NADH-quinone oxidoreductase subunit D [Streptomyces massaspo...
| 2129 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.1044 | Seems to have no N-terminal signal seq.
|