| ID | SAVERM_4851
| Type | CDS
|
| From | 5896755
| nt length | 1977
|
| To | 5898731
| aa length | 658
|
| Gene | recQ
| pI | 4.97
|
| Definition | putative ATP-dependent DNA helicase
| M.W (Da) | 71552
|
| Note | PF00270: DEAD/DEAH box helicase
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | DNA recombination
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4577 putative helicase | 1066 | 0.0e+00
|
| sgr | SGR_2970 putative ATP-dependent DNA helicase | 993 | 0.0e+00
|
| sam | SAM23877_4398 ATP-dependent DNA helicase RecQ | 1083 | 0.0e+00
|
| scab | SCAB37941 putative ATP-dependent DNA helicase | 1071 | 0.0e+00
|
| sace | SACE_3331 ATP-dependent DNA helicase | 889 | 0.0e+00
|
| nfar | nfa44830 helicase | 859 | 0.0e+00
|
| bsub | BG13522 yocI; similar to ATP-dependent DNA helicase | 370 | 1.8e-103
|
| ecoli | gi|49176420 ATP-dependent DNA helicase [Escherichia coli K12] | 473 | 1.3e-134
|
| paer | PA3344 [gene=recQ] [prot=ATP-dependent DNA helicase RecQ] [comment=PA3344] | 619 | 2.0e-178
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| RQC | 1 | RQC domain | 408-521 | 112.9 | 6.2e-33
|
| HRDC | 1 | HRDC domain | 556-619 | 74.3 | 5.3e-21
|
| Helicase_C | 1 | Helicase conserved C-terminal domain | 225-330 | 66.1 | 3e-18
|
| RecQ_Zn_bind | 1 | RecQ zinc-binding | 343-406 | 64.8 | 8.1e-18
|
| DEAD | 1 | DEAD/DEAH box helicase | 29-186 | 59.3 | 3.6e-16
|
BLAST search result (top 10 hits)
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.3501 | Seems to have no N-terminal signal seq.
|