| ID | SAVERM_4876
| Type | CDS
|
| From | 5928538
| nt length | 1080
|
| To | 5927459
| aa length | 359
|
| Gene | korB
| pI | 6.29
|
| Definition | putative 2-oxoglutarate ferredoxin oxidoreductase, beta subunit
| M.W (Da) | 38528
|
| Note | PF02775: Thiamine pyrophosphate enzyme, C-terminal TPP binding domain
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | TCA cycle
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4594 putative oxidoreductase | 648 | 0.0e+00
|
| sgr | SGR_2930 putative ferrodoxin oxidoreductase beta subunit | 640 | 0.0e+00
|
| sam | SAM23877_4429 2-oxoglutarate oxidoreductase subunit KorB | 676 | 0.0e+00
|
| scab | SCAB37571 putative 2-oxoglutarate ferredoxin oxidoreductase, beta subunit | 668 | 0.0e+00
|
| sace | SACE_3926 2-oxoglutarate ferredoxin oxidoreductase, beta subunit | 476 | 3.0e-170
|
| nfar | nfa36610 2-oxoglutarate ferredoxin oxidoreductase beta subunit | 420 | 1.1e-118
|
| mtub | gi|15609591 ferrodoxin oxidoreductase beta subunit [Mycobacterium tuberculosis H37Rv] | 425 | 2.7e-120
|
| ecoli | gi|16129339 putative oxidoreductase, Fe-S subunit [Escherichia coli K12] | 54 | 1.2e-08
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| TPP_enzyme_C | 1 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 71-218 | 102.9 | 1.2e-29
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_067367371.1 | 2-oxoacid:ferredoxin oxidoreductase subunit beta [Streptomyc...
| 1749 | 0.0e+00 |
| WP_054232177.1 | 2-oxoacid:ferredoxin oxidoreductase subunit beta [Streptomyc...
| 1748 | 0.0e+00 |
| WP_190169911.1 | 2-oxoacid:ferredoxin oxidoreductase subunit beta [Streptomyc...
| 1747 | 0.0e+00 |
| WP_097285808.1 | MULTISPECIES: 2-oxoacid:ferredoxin oxidoreductase subunit be...
| 1746 | 0.0e+00 |
| WP_143602567.1 | MULTISPECIES: 2-oxoacid:ferredoxin oxidoreductase subunit be...
| 1745 | 0.0e+00 |
| WP_075028568.1 | MULTISPECIES: 2-oxoacid:ferredoxin oxidoreductase subunit be...
| 1744 | 0.0e+00 |
| WP_212727107.1 | 2-oxoacid:ferredoxin oxidoreductase subunit beta [Streptomyc...
| 1744 | 0.0e+00 |
| WP_168494549.1 | 2-oxoacid:ferredoxin oxidoreductase subunit beta [Streptomyc...
| 1743 | 0.0e+00 |
| WP_143655527.1 | 2-oxoacid:ferredoxin oxidoreductase subunit beta [Streptomyc...
| 1742 | 0.0e+00 |
| WP_095853152.1 | MULTISPECIES: 2-oxoacid:ferredoxin oxidoreductase subunit be...
| 1742 | 0.0e+00 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1821 | Seems to have no N-terminal signal seq.
|