| ID | SAVERM_4892
| Type | CDS
|
| From | 5946480
| nt length | 393
|
| To | 5946872
| aa length | 130
|
| Gene |
| pI | 8.89
|
| Definition | putative membrane protein
| M.W (Da) | 14240
|
| Note | PF03733: Domain of unknown function (DUF307)
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | miscellaneous
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4610 putative integral membrane protein | 214 | 6.0e-74
|
| sgr | SGR_2913 conserved hypothetical protein | 229 | 9.0e-80
|
| sam | SAM23877_4445 conserved membrane protein of unknown function | 231 | 7.0e-81
|
| scab | SCAB37401 putative integral membrane protein | 204 | 5.0e-70
|
| sace | SACE_0576 integral membrane protein | 158 | 6.0e-52
|
| nfar | nfa6500 hypothetical protein | 182 | 1.1e-47
|
| mtub | gi|15608010 POSSIBLE CONSERVED INTEGRAL MEMBRANE PROTEIN [Mycobacterium tuberculosis H37Rv] | 154 | 2.4e-39
|
| cglu | gi|19552075 COG3304:Uncharacterized membrane protein [Corynebacterium glutamicum] | 138 | 7.7e-35
|
| ecoli | gi|16128928 hypothetical protein b0961 [Escherichia coli K12] | 104 | 2.2e-24
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; ecoli, Escherichia coli K-12;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| YccF | 2 | Inner membrane component domain | 4-53, 68-118 | 121.7 | 1.3e-35
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_016437686.1 | MULTISPECIES: YccF domain-containing protein [unclassified S...
| 494 | 1.9e-62 |
| WP_039656300.1 | MULTISPECIES: YccF domain-containing protein [Streptomyces] ...
| 494 | 2.4e-62 |
| WP_108014565.1 | YccF domain-containing protein [Streptomyces sp. VMFN-G11Ma]...
| 493 | 2.9e-62 |
| WP_058923831.1 | YccF domain-containing protein [Streptomyces sp. CdTB01] >gb...
| 492 | 5.2e-62 |
| WP_030945181.1 | YccF domain-containing protein [Streptomyces sp. NRRL S-646]
| 491 | 6.0e-62 |
| WP_189703342.1 | YccF domain-containing protein [Streptomyces anandii] >dbj
| 490 | 8.0e-62 |
| WP_145886737.1 | YccF domain-containing protein [Streptomyces sp. BK340] >lcl...
| 489 | 1.1e-61 |
| WP_208783379.1 | YccF domain-containing protein [Streptomyces griseorubiginos...
| 489 | 1.2e-61 |
| WP_054228318.1 | MULTISPECIES: YccF domain-containing protein [Streptomyces] ...
| 489 | 1.3e-61 |
| WP_095853137.1 | MULTISPECIES: YccF domain-containing protein [unclassified S...
| 488 | 1.8e-61 |
PSORT result
| Localization | Certainty | PSORT said
|
| membrane | 0.4800 | Seems to have an uncleavable N-term signal seq
|