| ID | SAVERM_4898
| Type | CDS
|
| From | 5954746
| nt length | 657
|
| To | 5954090
| aa length | 218
|
| Gene |
| pI | 4.83
|
| Definition | hypothetical protein
| M.W (Da) | 22427
|
| Note | PF00106: short chain dehydrogenase
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | similar to unknown proteins
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4633 hypothetical protein | 309 | 1.0e-108
|
| sgr | SGR_2886 conserved hypothetical protein | 306 | 1.0e-107
|
| sam | SAM23877_4452 putative sugar epimerase YhfK | 311 | 3.0e-109
|
| scab | SCAB37351 hypothetical protein | 338 | 3.0e-120
|
| sace | SACE_0061 NAD-dependent epimerase/dehydratase | 194 | 1.0e-63
|
| nfar | nfa26040 hypothetical protein | 204 | 6.4e-54
|
| cglu | gi|19554237 COG0702:Predicted nucleoside-diphosphate-sugar epimerases [Corynebacterium glutamicum] | 130 | 6.4e-32
|
| bsub | BG13056 yhfK; similar to hypothetical proteins | 126 | 1.2e-30
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| NAD_binding_10 | 1 | NAD(P)H-binding | 7-192 | 135.3 | 2e-39
|
| NmrA | 1 | NmrA-like family | 3-167 | 37.2 | 2.1e-09
|
| Epimerase | 1 | NAD dependent epimerase/dehydratase family | 3-142 | 29.0 | 6.2e-07
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| QIY97647.1 | SDR family oxidoreductase [Streptomyces sp. S1D4-11]
| 847 | 2.4e-113 |
| WP_103549147.1 | SDR family oxidoreductase [Streptomyces populi] >gb
| 843 | 1.0e-112 |
| WP_151473526.1 | SDR family oxidoreductase [Streptomyces triticiradicis] >lcl...
| 841 | 2.2e-112 |
| WP_168494587.1 | MULTISPECIES: SDR family oxidoreductase [Streptomyces] >gb
| 840 | 2.9e-112 |
| WP_099500600.1 | MULTISPECIES: SDR family oxidoreductase [Streptomyces] >gb
| 840 | 3.3e-112 |
| WP_189190375.1 | SDR family oxidoreductase [Streptomyces albiflavescens] >dbj...
| 839 | 4.7e-112 |
| WP_165265799.1 | SDR family oxidoreductase [Streptomyces scabichelini] >gb
| 836 | 1.1e-111 |
| WP_177324077.1 | SDR family oxidoreductase [Streptomyces mirabilis] >emb
| 835 | 1.5e-111 |
| WP_028805128.1 | SDR family oxidoreductase [Streptomyces sp. 142MFCol3.1]
| 835 | 1.6e-111 |
| WP_095936021.1 | SDR family oxidoreductase [Streptomyces sp. Tue6028] >gb
| 834 | 2.0e-111 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.2360 | Seems to have no N-terminal signal seq.
|