| ID | SAVERM_4910
| Type | CDS
|
| From | 5966111
| nt length | 435
|
| To | 5966545
| aa length | 144
|
| Gene | rplK
| pI | 10.32
|
| Definition | putative ribosomal protein L11
| M.W (Da) | 15218
|
| Note | relC, PF00298: Ribosomal protein L11, RNA binding domain
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4648 50S ribosomal protein L11 | 283 | 7.0e-101
|
| sgr | SGR_2874 50S ribosomal protein L11 | 280 | 2.0e-99
|
| sam | SAM23877_4467 50S ribosomal protein L11 | 285 | 1.0e-101
|
| scab | SCAB37241 putative ribosomal protein L11 | 288 | 8.0e-103
|
| sace | SACE_6871 50S ribosomal protein L11 | 228 | 2.0e-79
|
| nfar | nfa51150 rplK ribosomal protein L11 | 239 | 6.8e-65
|
| mtub | gi|15607780 50S ribosomal protein L11 [Mycobacterium tuberculosis H37Rv] | 235 | 1.0e-63
|
| cglu | gi|19551719 COG0080:Ribosomal protein L11 [Corynebacterium glutamicum] | 233 | 2.1e-63
|
| bsub | BG10163 rplK, relC, tsp; 50S ribosomal protein L11 | 193 | 3.0e-51
|
| ecoli | gi|16131813 50S ribosomal protein L11 [Escherichia coli K12] | 179 | 5.1e-47
|
| paer | PA4274 [gene=rplK] [prot=50S ribosomal protein L11] [comment=PA4274] | 174 | 2.2e-45
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L11_N | 1 | Ribosomal protein L11, N-terminal domain | 12-69 | 100.5 | 3e-29
|
| Ribosomal_L11 | 1 | Ribosomal protein L11, RNA binding domain | 74-142 | 86.2 | 1.5e-24
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_030359033.1 | MULTISPECIES: 50S ribosomal protein L11 [Streptomyces] >gb
| 656 | 1.3e-86 |
| WP_189217878.1 | 50S ribosomal protein L11 [Streptomyces ruber] >dbj
| 654 | 2.5e-86 |
| WP_095853122.1 | MULTISPECIES: 50S ribosomal protein L11 [unclassified Strept...
| 654 | 2.5e-86 |
| WP_006383482.1 | MULTISPECIES: 50S ribosomal protein L11 [Streptomyces] >gb
| 653 | 3.9e-86 |
| WP_095748118.1 | 50S ribosomal protein L11 [Streptomyces sp. SA15] >gb
| 652 | 4.6e-86 |
| WP_016645192.1 | MULTISPECIES: 50S ribosomal protein L11 [Streptomyces] >gb
| 652 | 5.6e-86 |
| WP_020135826.1 | MULTISPECIES: 50S ribosomal protein L11 [Streptomyces] >gb
| 651 | 7.2e-86 |
| WP_019072313.1 | MULTISPECIES: 50S ribosomal protein L11 [Streptomyces] >lcl
| 651 | 8.2e-86 |
| WP_040252631.1 | MULTISPECIES: 50S ribosomal protein L11 [Streptomyces] >gb
| 650 | 9.1e-86 |
| WP_015658483.1 | MULTISPECIES: 50S ribosomal protein L11 [Streptomyces] >lcl
| 650 | 9.1e-86 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.1190 | Seems to have no N-terminal signal seq.
|