| ID | SAVERM_4912
| Type | CDS
|
| From | 5967982
| nt length | 531
|
| To | 5968512
| aa length | 176
|
| Gene | rplJ
| pI | 9.99
|
| Definition | putative ribosomal protein L10
| M.W (Da) | 18542
|
| Note | PF00466: Ribosomal protein L10
| AseI frg. | I
|
| SignalP v.4.0 | Non-secretory protein | plot
| Category | ribosomal protein
|
Orthologs (if any)
| Bacteria* | Reciprocally best hit to | Score | E-value
|
| coel | SCO4652 50S ribosomal protein L10 | 305 | 2.0e-108
|
| sgr | SGR_2871 50S ribosomal protein L10 | 322 | 3.0e-115
|
| sam | SAM23877_4471 50S ribosomal protein L10 | 319 | 4.0e-114
|
| scab | SCAB37211 putative ribosomal protein L10 | 325 | 2.0e-116
|
| sace | SACE_6868 50S ribosomal protein L10 | 177 | 6.0e-58
|
| nfar | nfa51120 rplJ ribosomal protein L10 | 202 | 1.3e-53
|
| mtub | gi|15607791 50S ribosomal protein L10 [Mycobacterium tuberculosis H37Rv] | 196 | 7.4e-52
|
| cglu | gi|19551728 COG0244:Ribosomal protein L10 [Corynebacterium glutamicum] | 179 | 6.7e-47
|
| bsub | BG11220 rplJ; 50S ribosomal protein L10 | 109 | 8.0e-26
|
| ecoli | gi|16131815 50S ribosomal protein L10 [Escherichia coli K12] | 83 | 9.1e-18
|
| paer | PA4272 [gene=rplJ] [prot=50S ribosomal protein L10] [comment=PA4272] | 88 | 3.8e-19
|
*coel, Streptomyces coelicolor A3(2); sgr, Streptomyces griseus IFO13350; sam, Streptomyces ambofaciens ATCC 23877; scab, Streptomyces scabies 87.22; sace, Saccharopolyspora erythraea NRRL2338; nfar, Nocardia farcinica IFM 10152; mtub, Mycobacterium tuberculosis H37Rv; cglu, Corynebacterium glutamicum; bsub, Bacillus subtilis; ecoli, Escherichia coli K-12; paer, Pseudomonas aeruginosa;
Pfam search result
| Model | No. | Description | Position (aa) | Score | E-value
|
| Ribosomal_L10 | 1 | Ribosomal protein L10 | 1-98 | 88.1 | 3.2e-25
|
BLAST search result (top 10 hits)
| ID | Description | Score | E-value
|
| WP_148010011.1 | 50S ribosomal protein L10 [Streptomyces sp. me109] >lcl
| 872 | 1.7e-118 |
| WP_099500614.1 | MULTISPECIES: 50S ribosomal protein L10 [Streptomyces] >gb
| 867 | 9.0e-118 |
| WP_055528987.1 | 50S ribosomal protein L10 [Streptomyces graminilatus]
| 865 | 1.9e-117 |
| WP_151482647.1 | 50S ribosomal protein L10 [Streptomyces albicerus]
| 863 | 3.2e-117 |
| WP_171145959.1 | 50S ribosomal protein L10 [Streptomyces sp. S3(2020)] >gb
| 863 | 4.3e-117 |
| WP_164319068.1 | MULTISPECIES: 50S ribosomal protein L10 [unclassified Strept...
| 861 | 7.7e-117 |
| WP_046262544.1 | 50S ribosomal protein L10 [Streptomyces sp. WM6386] >gb
| 861 | 8.7e-117 |
| WP_221353071.1 | 50S ribosomal protein L10 [Streptomyces sp. REN17]
| 860 | 1.0e-116 |
| WP_020135822.1 | MULTISPECIES: 50S ribosomal protein L10 [Streptomyces] >gb
| 860 | 1.1e-116 |
| WP_164373166.1 | MULTISPECIES: 50S ribosomal protein L10 [unclassified Strept...
| 860 | 1.1e-116 |
PSORT result
| Localization | Certainty | PSORT said
|
| cytoplasm | 0.0603 | Seems to have no N-terminal signal seq.
|